miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 3' -62.8 NC_001798.1 + 144061 1.1 0.000669
Target:  5'- gCCAGGCCGUGCGCCUGGCCGGGAUGGu -3'
miRNA:   3'- -GGUCCGGCACGCGGACCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 9659 0.79 0.106883
Target:  5'- gCGGGCCGcGCGCggagGGCgCGGGAUGGg -3'
miRNA:   3'- gGUCCGGCaCGCGga--CCG-GCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 148409 0.78 0.136747
Target:  5'- gCGGGCgGgguggGCGCCggGGCgGGGGUGGg -3'
miRNA:   3'- gGUCCGgCa----CGCGGa-CCGgCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 6369 0.78 0.140124
Target:  5'- aCGGGCCGggGgGCCggggGGCCGGGGggccgGGg -3'
miRNA:   3'- gGUCCGGCa-CgCGGa---CCGGCCCUa----CC- -5'
5111 3' -62.8 NC_001798.1 + 68729 0.78 0.140124
Target:  5'- uCCAGGUCcacgaagGCGCa-GGCCGGGAUGGu -3'
miRNA:   3'- -GGUCCGGca-----CGCGgaCCGGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 20481 0.77 0.150352
Target:  5'- gCCGGuGCgCGUGCGCgauccccggaagaCUGGCCGGGGccUGGg -3'
miRNA:   3'- -GGUC-CG-GCACGCG-------------GACCGGCCCU--ACC- -5'
5111 3' -62.8 NC_001798.1 + 66833 0.77 0.162032
Target:  5'- cCCGGuGCCG-GCGCCcaGGCCGGGGUuuccGGg -3'
miRNA:   3'- -GGUC-CGGCaCGCGGa-CCGGCCCUA----CC- -5'
5111 3' -62.8 NC_001798.1 + 36512 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 36596 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 36554 0.76 0.178307
Target:  5'- gCCGGGCgGggGCGCgCggcGGCCGGGcgGGg -3'
miRNA:   3'- -GGUCCGgCa-CGCG-Ga--CCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 28607 0.76 0.186977
Target:  5'- --cGGCCGcGCGCCUGGCCcgacGGGGguccUGGg -3'
miRNA:   3'- gguCCGGCaCGCGGACCGG----CCCU----ACC- -5'
5111 3' -62.8 NC_001798.1 + 133288 0.74 0.227541
Target:  5'- aCCAuGGCCGcGUGCCugcagugggacucgaUGGCCGGGGggucgGGg -3'
miRNA:   3'- -GGU-CCGGCaCGCGG---------------ACCGGCCCUa----CC- -5'
5111 3' -62.8 NC_001798.1 + 88022 0.74 0.236066
Target:  5'- cCCGGGg---GCGCUUGGCCGGGGaGGg -3'
miRNA:   3'- -GGUCCggcaCGCGGACCGGCCCUaCC- -5'
5111 3' -62.8 NC_001798.1 + 2614 0.74 0.246535
Target:  5'- gCGGGgcgccgcCCGgcgGCGcCCUGGCCGGGgcGGg -3'
miRNA:   3'- gGUCC-------GGCa--CGC-GGACCGGCCCuaCC- -5'
5111 3' -62.8 NC_001798.1 + 4836 0.73 0.263846
Target:  5'- cCCGGGCCGcGCGgCggGGCgacgguccggguuCGGGGUGGg -3'
miRNA:   3'- -GGUCCGGCaCGCgGa-CCG-------------GCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 24594 0.73 0.264439
Target:  5'- gCguGGCCGUggaGUGCCUGGCCgccugccgcGGGAuccUGGa -3'
miRNA:   3'- -GguCCGGCA---CGCGGACCGG---------CCCU---ACC- -5'
5111 3' -62.8 NC_001798.1 + 77436 0.73 0.289081
Target:  5'- gCCGGGCC-UGCGCCcaGCCGGaGggGGa -3'
miRNA:   3'- -GGUCCGGcACGCGGacCGGCC-CuaCC- -5'
5111 3' -62.8 NC_001798.1 + 93125 0.72 0.30872
Target:  5'- gCGGGCgGguuugagcaGCGCCUGGCCucGGuGAUGGc -3'
miRNA:   3'- gGUCCGgCa--------CGCGGACCGG--CC-CUACC- -5'
5111 3' -62.8 NC_001798.1 + 44872 0.72 0.30872
Target:  5'- gCAGaGCCGcGCGCgUGuuCCGGGAUGGc -3'
miRNA:   3'- gGUC-CGGCaCGCGgACc-GGCCCUACC- -5'
5111 3' -62.8 NC_001798.1 + 151610 0.72 0.315489
Target:  5'- --cGGCCGgGgGCCgGGCCGGGGgcgUGGc -3'
miRNA:   3'- gguCCGGCaCgCGGaCCGGCCCU---ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.