Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 5' | -55.2 | NC_001798.1 | + | 153027 | 0.66 | 0.914821 |
Target: 5'- aGUCCggGCCCGcgc--GGCgGCGCGCGg -3' miRNA: 3'- -CAGGa-CGGGCuacuaUUGgUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 127035 | 0.66 | 0.914821 |
Target: 5'- cGUCCUGgCCGAcuuUAGCCugGUGa- -3' miRNA: 3'- -CAGGACgGGCUacuAUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 52819 | 0.66 | 0.914821 |
Target: 5'- uUCCUGCUCGAa---GACCugGCGg- -3' miRNA: 3'- cAGGACGGGCUacuaUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 118809 | 0.66 | 0.93142 |
Target: 5'- -gCCUGCCCcGUGG--ACCugGgGCu -3' miRNA: 3'- caGGACGGGcUACUauUGGugCgCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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