miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5111 5' -55.2 NC_001798.1 + 76615 0.68 0.844228
Target:  5'- uGUCC--CCCGA----GGCCACGCGCAu -3'
miRNA:   3'- -CAGGacGGGCUacuaUUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 75299 0.69 0.773465
Target:  5'- -cCCUgGCCCGcgaGGUGGCCGCGUGUu -3'
miRNA:   3'- caGGA-CGGGCua-CUAUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 74262 0.67 0.875154
Target:  5'- -gCCUGCCCGcgGGaacGCC-CGCGUu -3'
miRNA:   3'- caGGACGGGCuaCUau-UGGuGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 71965 0.69 0.804813
Target:  5'- cGUgCUgGCCCuGGUGGUcggggacgcgcugagGGCCACGUGCAa -3'
miRNA:   3'- -CAgGA-CGGG-CUACUA---------------UUGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 65327 0.68 0.84747
Target:  5'- cGUCCUuaaacaugaugaaggGgcuUCCGGUGGUGGCCGCGCuGCGc -3'
miRNA:   3'- -CAGGA---------------C---GGGCUACUAUUGGUGCG-CGU- -5'
5111 5' -55.2 NC_001798.1 + 62615 0.69 0.818947
Target:  5'- --gCUGCCCGAUccGAUGACCAuCGC-CGa -3'
miRNA:   3'- cagGACGGGCUA--CUAUUGGU-GCGcGU- -5'
5111 5' -55.2 NC_001798.1 + 54782 0.67 0.875154
Target:  5'- cUgCUGCCCGAcGAUGAcgccgccaugcCCGCGgGCGu -3'
miRNA:   3'- cAgGACGGGCUaCUAUU-----------GGUGCgCGU- -5'
5111 5' -55.2 NC_001798.1 + 54372 0.68 0.860112
Target:  5'- cGUCCgGCCCaccgGggGGCCGCgGCGCGg -3'
miRNA:   3'- -CAGGaCGGGcua-CuaUUGGUG-CGCGU- -5'
5111 5' -55.2 NC_001798.1 + 52819 0.66 0.914821
Target:  5'- uUCCUGCUCGAa---GACCugGCGg- -3'
miRNA:   3'- cAGGACGGGCUacuaUUGGugCGCgu -5'
5111 5' -55.2 NC_001798.1 + 52574 0.67 0.88931
Target:  5'- -gCCUGgCCGAcacGGUggUCGCGUGCGu -3'
miRNA:   3'- caGGACgGGCUa--CUAuuGGUGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 51303 0.69 0.801214
Target:  5'- -aCCUggGCCCGAUGGac-CCACGCGaCGu -3'
miRNA:   3'- caGGA--CGGGCUACUauuGGUGCGC-GU- -5'
5111 5' -55.2 NC_001798.1 + 50090 0.66 0.926131
Target:  5'- cUCCUGCggaggCCGGgcUGGUGGCgC-CGCGCAu -3'
miRNA:   3'- cAGGACG-----GGCU--ACUAUUG-GuGCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 47573 0.66 0.920598
Target:  5'- aGUCgUGUCCGcgGGaagcGCCGCGCGgGa -3'
miRNA:   3'- -CAGgACGGGCuaCUau--UGGUGCGCgU- -5'
5111 5' -55.2 NC_001798.1 + 44616 0.67 0.873689
Target:  5'- cUCCUGUUCGGUGGgcgcgcccguggGGCCAUuggGCGCAu -3'
miRNA:   3'- cAGGACGGGCUACUa-----------UUGGUG---CGCGU- -5'
5111 5' -55.2 NC_001798.1 + 43693 0.7 0.763945
Target:  5'- gGUCacgGCCCGGaGAUGcgugGCCAgGCGCGg -3'
miRNA:   3'- -CAGga-CGGGCUaCUAU----UGGUgCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 41906 0.68 0.854645
Target:  5'- cGUCCUuaaugcgGCCCGGcgaacggacacggccUGAUAuucCCGCGCGUg -3'
miRNA:   3'- -CAGGA-------CGGGCU---------------ACUAUu--GGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 39059 0.68 0.860112
Target:  5'- -gCCaggGCCuCGAUGAgauuuuCCugGCGCAg -3'
miRNA:   3'- caGGa--CGG-GCUACUauu---GGugCGCGU- -5'
5111 5' -55.2 NC_001798.1 + 28589 0.66 0.920598
Target:  5'- aUCUggugGCCUGGgaGAcGGCCGCGCGCc -3'
miRNA:   3'- cAGGa---CGGGCUa-CUaUUGGUGCGCGu -5'
5111 5' -55.2 NC_001798.1 + 28372 0.71 0.694492
Target:  5'- cGUCCccGCCCGcgGAcgcGCCGCGCGgGa -3'
miRNA:   3'- -CAGGa-CGGGCuaCUau-UGGUGCGCgU- -5'
5111 5' -55.2 NC_001798.1 + 27477 0.67 0.901903
Target:  5'- cGUCCUGCCgCGcgGGggcgGgcgcgggaaaaaaGCCGCGCGgGg -3'
miRNA:   3'- -CAGGACGG-GCuaCUa---U-------------UGGUGCGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.