Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5111 | 5' | -55.2 | NC_001798.1 | + | 153027 | 0.66 | 0.914821 |
Target: 5'- aGUCCggGCCCGcgc--GGCgGCGCGCGg -3' miRNA: 3'- -CAGGa-CGGGCuacuaUUGgUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 144095 | 1.08 | 0.003822 |
Target: 5'- gGUCCUGCCCGAUGAUAACCACGCGCAc -3' miRNA: 3'- -CAGGACGGGCUACUAUUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 140835 | 0.71 | 0.704649 |
Target: 5'- cGUCCUcaacaGCCaGGUcgcGGUGACCGCGCGCc -3' miRNA: 3'- -CAGGA-----CGGgCUA---CUAUUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 137944 | 0.67 | 0.902542 |
Target: 5'- -gCC-GCCCGGUcc--GCCGCGCGCu -3' miRNA: 3'- caGGaCGGGCUAcuauUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 135069 | 0.66 | 0.93142 |
Target: 5'- cUCCUGCCCGccuuucgGGaAGCgGuCGCGCGg -3' miRNA: 3'- cAGGACGGGCua-----CUaUUGgU-GCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 131561 | 0.69 | 0.809276 |
Target: 5'- -cCCgacgGCCCGGUGcguaacuGUGGuCCGCGCGCc -3' miRNA: 3'- caGGa---CGGGCUAC-------UAUU-GGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 127035 | 0.66 | 0.914821 |
Target: 5'- cGUCCUGgCCGAcuuUAGCCugGUGa- -3' miRNA: 3'- -CAGGACgGGCUacuAUUGGugCGCgu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 125064 | 0.68 | 0.827558 |
Target: 5'- -gUCUGCCCGugGGUGGCCACGUcCAc -3' miRNA: 3'- caGGACGGGCuaCUAUUGGUGCGcGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 118809 | 0.66 | 0.93142 |
Target: 5'- -gCCUGCCCcGUGG--ACCugGgGCu -3' miRNA: 3'- caGGACGGGcUACUauUGGugCgCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 118078 | 0.67 | 0.882346 |
Target: 5'- -cCCUGCUacgcagcgcccgCGAUGggGAggcCCACGCGCGa -3' miRNA: 3'- caGGACGG------------GCUACuaUU---GGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 116925 | 0.76 | 0.391046 |
Target: 5'- cGUCCUGCCCGu------CCACGCGCu -3' miRNA: 3'- -CAGGACGGGCuacuauuGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 113297 | 0.69 | 0.782856 |
Target: 5'- gGUCCUcaagccGCUgGAgcUGGUGGCCGCGgGCAu -3' miRNA: 3'- -CAGGA------CGGgCU--ACUAUUGGUGCgCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 103147 | 0.73 | 0.581194 |
Target: 5'- -gCC-GCCCGAUGGcgcacagGGCCACGUGCGc -3' miRNA: 3'- caGGaCGGGCUACUa------UUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 100180 | 0.7 | 0.724765 |
Target: 5'- -aCCgucgGCCgGcgGGUGAgCGCGCGCAu -3' miRNA: 3'- caGGa---CGGgCuaCUAUUgGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 95104 | 0.77 | 0.382614 |
Target: 5'- -aCCUgcugcgGCCCG-UGAUGGCCGCGCGCc -3' miRNA: 3'- caGGA------CGGGCuACUAUUGGUGCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 88848 | 0.67 | 0.896043 |
Target: 5'- aUCUcGCggCCGAUGGUcgucacgguggcGGCCACGUGCAg -3' miRNA: 3'- cAGGaCG--GGCUACUA------------UUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 86230 | 0.72 | 0.653424 |
Target: 5'- -aCCUggGCCCGcUGAUGGCCAcCGUGCu -3' miRNA: 3'- caGGA--CGGGCuACUAUUGGU-GCGCGu -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 85254 | 0.67 | 0.882346 |
Target: 5'- -cCCgcgGCCgCGcgGG--GCCGCGCGCGa -3' miRNA: 3'- caGGa--CGG-GCuaCUauUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 78549 | 0.67 | 0.896043 |
Target: 5'- gGUCauggcggGCCUGcgGGaggcgcUGGCCGCGCGCGa -3' miRNA: 3'- -CAGga-----CGGGCuaCU------AUUGGUGCGCGU- -5' |
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5111 | 5' | -55.2 | NC_001798.1 | + | 76893 | 0.66 | 0.926131 |
Target: 5'- -cCCUGCCCGcgGGguggaccGACCugGC-CGa -3' miRNA: 3'- caGGACGGGCuaCUa------UUGGugCGcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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