Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5112 | 5' | -60.9 | NC_001798.1 | + | 24507 | 0.66 | 0.743378 |
Target: 5'- cCGCCuCCGCGC----CGGcCGGGGcCGa -3' miRNA: 3'- -GCGG-GGCGCGaacuGCCaGUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 10356 | 0.66 | 0.74709 |
Target: 5'- aCGCCCgCGuCGuCUucuucgucguagucgUcGGgGGUCGGGGUCGg -3' miRNA: 3'- -GCGGG-GC-GC-GA---------------A-CUgCCAGUCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 30830 | 0.66 | 0.752631 |
Target: 5'- gGCCCCGCGCUcccugucgcUGGgGGgacaCAcGGUCc -3' miRNA: 3'- gCGGGGCGCGA---------ACUgCCa---GUcCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 101799 | 0.66 | 0.752631 |
Target: 5'- gGCCuCCGCGCcgGGCgccucgGGUUGGGGUa- -3' miRNA: 3'- gCGG-GGCGCGaaCUG------CCAGUCCCAgc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 2552 | 0.67 | 0.686266 |
Target: 5'- gGCCCC-CGCgggaggGGCGGccgCGGGG-CGg -3' miRNA: 3'- gCGGGGcGCGaa----CUGCCa--GUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 2436 | 0.67 | 0.685296 |
Target: 5'- gGCCCCG-GCggcUGGCGG-CGccagccgcccugcGGGUCGg -3' miRNA: 3'- gCGGGGCgCGa--ACUGCCaGU-------------CCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 150903 | 0.68 | 0.617864 |
Target: 5'- cCGcCCCCGCGCcggGGCGcucuUCGGGGggCGg -3' miRNA: 3'- -GC-GGGGCGCGaa-CUGCc---AGUCCCa-GC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 85269 | 0.68 | 0.621782 |
Target: 5'- gGCCgCGCGCgaggcuucgggggGGCGGgggcCGGGGUCc -3' miRNA: 3'- gCGGgGCGCGaa-----------CUGCCa---GUCCCAGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 102376 | 0.68 | 0.627662 |
Target: 5'- aGCCCaCcCGCcUGGCGGUCGGcGG-CGa -3' miRNA: 3'- gCGGG-GcGCGaACUGCCAGUC-CCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 41458 | 0.67 | 0.637463 |
Target: 5'- uGCCCCGC-CggggggGGCGGUCGGcGGg-- -3' miRNA: 3'- gCGGGGCGcGaa----CUGCCAGUC-CCagc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 145818 | 0.67 | 0.64726 |
Target: 5'- aCGCgg-GCGCggcGGCGGUCGGGGUgGg -3' miRNA: 3'- -GCGgggCGCGaa-CUGCCAGUCCCAgC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 36250 | 0.67 | 0.64726 |
Target: 5'- cCGCCCgCGCGCUccugUGugGacccCGGGGUgGg -3' miRNA: 3'- -GCGGG-GCGCGA----ACugCca--GUCCCAgC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 31950 | 0.67 | 0.651176 |
Target: 5'- cCGCCCCGCGCUcGccccucgccccccagGgGGUgGGGGcCa -3' miRNA: 3'- -GCGGGGCGCGAaC---------------UgCCAgUCCCaGc -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 82280 | 0.67 | 0.657047 |
Target: 5'- uGCCCCGagcgaGCcuUUGuGCGGUU-GGGUCGu -3' miRNA: 3'- gCGGGGCg----CG--AAC-UGCCAGuCCCAGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 40858 | 0.67 | 0.657047 |
Target: 5'- aGCCCCGcCGCagGAUGaaauacagcuccGUCAGGG-CGa -3' miRNA: 3'- gCGGGGC-GCGaaCUGC------------CAGUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 4840 | 0.67 | 0.666815 |
Target: 5'- gGCCgCGCgGCggggcGACGGUCcGGGuUCGg -3' miRNA: 3'- gCGGgGCG-CGaa---CUGCCAGuCCC-AGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 93269 | 0.67 | 0.666815 |
Target: 5'- gCGgCCCGCGCc-GGCGccGUCGGGG-CGu -3' miRNA: 3'- -GCgGGGCGCGaaCUGC--CAGUCCCaGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 102158 | 0.67 | 0.676557 |
Target: 5'- cCGCCCCcaccaGCGCcgUGAUGGUUucguGGGgccCGg -3' miRNA: 3'- -GCGGGG-----CGCGa-ACUGCCAGu---CCCa--GC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 15332 | 0.67 | 0.683357 |
Target: 5'- gGCCCCgGCGCgguagcggggggcgaGGCGGUgAGGGgggaaUCGg -3' miRNA: 3'- gCGGGG-CGCGaa-------------CUGCCAgUCCC-----AGC- -5' |
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5112 | 5' | -60.9 | NC_001798.1 | + | 153781 | 0.66 | 0.752631 |
Target: 5'- gCGgCCCGCGCUccuugcgcGGCGGcggCGGGGggcaggCGg -3' miRNA: 3'- -GCgGGGCGCGAa-------CUGCCa--GUCCCa-----GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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