miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 60525 0.72 0.391702
Target:  5'- gGGCcUGGCCcGUGACcgucagcuccacccGCCGCAGGUCa -3'
miRNA:   3'- -UUGaACCGGuCGCUGu-------------CGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 28787 0.73 0.332688
Target:  5'- ----aGGCggCGGCGGCGGCgCGCGGGUCc -3'
miRNA:   3'- uugaaCCG--GUCGCUGUCG-GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 146558 0.73 0.325232
Target:  5'- uGGCcgcgGGCCAGCaGACgGGCCGCGGGcCa -3'
miRNA:   3'- -UUGaa--CCGGUCG-CUG-UCGGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 3030 0.75 0.270069
Target:  5'- gGGCUccGGCCAGCcccggcACGGCCGCcAGGUCg -3'
miRNA:   3'- -UUGAa-CCGGUCGc-----UGUCGGCG-UCCAG- -5'
5114 3' -59 NC_001798.1 + 2286 0.75 0.251413
Target:  5'- cGCgcGGCCAGCGAggcCAGCgcgCGCGGGUCg -3'
miRNA:   3'- uUGaaCCGGUCGCU---GUCG---GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 56784 0.76 0.222694
Target:  5'- gGGCccUGGCCGcCGACGGCCGCggAGGUCa -3'
miRNA:   3'- -UUGa-ACCGGUcGCUGUCGGCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 143191 1.06 0.00187
Target:  5'- gAACUUGGCCAGCGACAGCCGCAGGUCc -3'
miRNA:   3'- -UUGAACCGGUCGCUGUCGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 147985 0.67 0.698412
Target:  5'- aGGCgcgUGcCCGGCcACAGCCGUGGGUg -3'
miRNA:   3'- -UUGa--ACcGGUCGcUGUCGGCGUCCAg -5'
5114 3' -59 NC_001798.1 + 87198 0.66 0.757498
Target:  5'- cGGC-UGGCCAcCGuCAGCCGCgAGGcCc -3'
miRNA:   3'- -UUGaACCGGUcGCuGUCGGCG-UCCaG- -5'
5114 3' -59 NC_001798.1 + 55732 0.66 0.747874
Target:  5'- ----cGGCCAGgugcuUGGCGGCCGCAcGGg- -3'
miRNA:   3'- uugaaCCGGUC-----GCUGUCGGCGU-CCag -5'
5114 3' -59 NC_001798.1 + 2687 0.66 0.746906
Target:  5'- gGGCgcGGCgAGCGAguCGGCCGCGGcgacgguGUCg -3'
miRNA:   3'- -UUGaaCCGgUCGCU--GUCGGCGUC-------CAG- -5'
5114 3' -59 NC_001798.1 + 145816 0.66 0.72833
Target:  5'- aAACgcgGGCgCGGCGGCGGUCG-GGGUg -3'
miRNA:   3'- -UUGaa-CCG-GUCGCUGUCGGCgUCCAg -5'
5114 3' -59 NC_001798.1 + 36027 0.66 0.72833
Target:  5'- -cCUUGGCUguuuggggGGUGGCGGC-GguGGUCg -3'
miRNA:   3'- uuGAACCGG--------UCGCUGUCGgCguCCAG- -5'
5114 3' -59 NC_001798.1 + 19745 0.66 0.72833
Target:  5'- cGCUcaUGGCCGGaGAaauguguGGCCGCAGGg- -3'
miRNA:   3'- uUGA--ACCGGUCgCUg------UCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 3497 0.66 0.72833
Target:  5'- cGGCUcaUGGCCA-CGGCGGCCGCcacgugcgccAGGcCc -3'
miRNA:   3'- -UUGA--ACCGGUcGCUGUCGGCG----------UCCaG- -5'
5114 3' -59 NC_001798.1 + 1636 0.66 0.72833
Target:  5'- ----aGGCgCAGCGGCGGCgCGUcgGGGUa -3'
miRNA:   3'- uugaaCCG-GUCGCUGUCG-GCG--UCCAg -5'
5114 3' -59 NC_001798.1 + 105754 0.66 0.722398
Target:  5'- -----cGCCGGCGACAaaugaguccccgcgcGcCCGCGGGUCc -3'
miRNA:   3'- uugaacCGGUCGCUGU---------------C-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 39108 0.66 0.718428
Target:  5'- -cCUUGGCUGuCGACgcGGcCCGCGGGUUg -3'
miRNA:   3'- uuGAACCGGUcGCUG--UC-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 23706 0.66 0.718428
Target:  5'- cGCUUcacGGCCGG--GCGGCCccgGCGGGUCg -3'
miRNA:   3'- uUGAA---CCGGUCgcUGUCGG---CGUCCAG- -5'
5114 3' -59 NC_001798.1 + 66025 0.66 0.718428
Target:  5'- ----gGGCgAuGUGGCGcauGCCGCGGGUCg -3'
miRNA:   3'- uugaaCCGgU-CGCUGU---CGGCGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.