Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 3' | -59 | NC_001798.1 | + | 36027 | 0.66 | 0.72833 |
Target: 5'- -cCUUGGCUguuuggggGGUGGCGGC-GguGGUCg -3' miRNA: 3'- uuGAACCGG--------UCGCUGUCGgCguCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 39108 | 0.66 | 0.718428 |
Target: 5'- -cCUUGGCUGuCGACgcGGcCCGCGGGUUg -3' miRNA: 3'- uuGAACCGGUcGCUG--UC-GGCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 43296 | 0.67 | 0.685277 |
Target: 5'- ----cGGCCAGCuugaggaggcgcuuGACGauuCCGCAGGUCu -3' miRNA: 3'- uugaaCCGGUCG--------------CUGUc--GGCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 54690 | 0.66 | 0.708452 |
Target: 5'- ----cGGCuCAGCGcgaGGCCGCcgGGGUCu -3' miRNA: 3'- uugaaCCG-GUCGCug-UCGGCG--UCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 55732 | 0.66 | 0.747874 |
Target: 5'- ----cGGCCAGgugcuUGGCGGCCGCAcGGg- -3' miRNA: 3'- uugaaCCGGUC-----GCUGUCGGCGU-CCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 56784 | 0.76 | 0.222694 |
Target: 5'- gGGCccUGGCCGcCGACGGCCGCggAGGUCa -3' miRNA: 3'- -UUGa-ACCGGUcGCUGUCGGCG--UCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 58698 | 0.7 | 0.496763 |
Target: 5'- ----gGGCC-GCGGCGGCgCGgGGGUCg -3' miRNA: 3'- uugaaCCGGuCGCUGUCG-GCgUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 60172 | 0.69 | 0.565923 |
Target: 5'- cGCUUGGCCcGCcuucuuCAGCgCGCuGGUCa -3' miRNA: 3'- uUGAACCGGuCGcu----GUCG-GCGuCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 60525 | 0.72 | 0.391702 |
Target: 5'- gGGCcUGGCCcGUGACcgucagcuccacccGCCGCAGGUCa -3' miRNA: 3'- -UUGaACCGGuCGCUGu-------------CGGCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 66025 | 0.66 | 0.718428 |
Target: 5'- ----gGGCgAuGUGGCGcauGCCGCGGGUCg -3' miRNA: 3'- uugaaCCGgU-CGCUGU---CGGCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 76156 | 0.7 | 0.48718 |
Target: 5'- ----aGGCCAGCGACAGCCaCGacuGUCg -3' miRNA: 3'- uugaaCCGGUCGCUGUCGGcGUc--CAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 83328 | 0.67 | 0.688316 |
Target: 5'- gAACgagGGCCgcAGCcauuCGGCCGCGGcGUCg -3' miRNA: 3'- -UUGaa-CCGG--UCGcu--GUCGGCGUC-CAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 87198 | 0.66 | 0.757498 |
Target: 5'- cGGC-UGGCCAcCGuCAGCCGCgAGGcCc -3' miRNA: 3'- -UUGaACCGGUcGCuGUCGGCG-UCCaG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 88030 | 0.69 | 0.565923 |
Target: 5'- cGCUUGGCCGGgGAgggcagGGCCGCuGGg- -3' miRNA: 3'- uUGAACCGGUCgCUg-----UCGGCGuCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 88402 | 0.67 | 0.657782 |
Target: 5'- cGCUcGGCUAacGCGGCGGCCGCuccGGa- -3' miRNA: 3'- uUGAaCCGGU--CGCUGUCGGCGu--CCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 91364 | 0.67 | 0.698412 |
Target: 5'- aAGCcgGGCCGcccGCGGCAcaaaacaucGCCGCcGGUCg -3' miRNA: 3'- -UUGaaCCGGU---CGCUGU---------CGGCGuCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 95107 | 0.68 | 0.627061 |
Target: 5'- uGCUgcGGCCcGUGAUGGCCGCGcgcccgauGGUCg -3' miRNA: 3'- uUGAa-CCGGuCGCUGUCGGCGU--------CCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 97470 | 0.69 | 0.545844 |
Target: 5'- cGGCUgggGGCCGGCGGCGcGaCCGgGGGg- -3' miRNA: 3'- -UUGAa--CCGGUCGCUGU-C-GGCgUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 100287 | 0.67 | 0.677156 |
Target: 5'- cAGCUcgcGGCCGGgGACgugcuacAGCCGCccccuGGUCa -3' miRNA: 3'- -UUGAa--CCGGUCgCUG-------UCGGCGu----CCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 102542 | 0.67 | 0.647551 |
Target: 5'- ----cGGCCGGCa--GGCCGCAcgcGGUCa -3' miRNA: 3'- uugaaCCGGUCGcugUCGGCGU---CCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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