miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 63 0.7 0.496763
Target:  5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3'
miRNA:   3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 1636 0.66 0.72833
Target:  5'- ----aGGCgCAGCGGCGGCgCGUcgGGGUa -3'
miRNA:   3'- uugaaCCG-GUCGCUGUCG-GCG--UCCAg -5'
5114 3' -59 NC_001798.1 + 1721 0.69 0.545844
Target:  5'- ----aGGCCAGC-ACGGUgcggCGCAGGUCc -3'
miRNA:   3'- uugaaCCGGUCGcUGUCG----GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 2286 0.75 0.251413
Target:  5'- cGCgcGGCCAGCGAggcCAGCgcgCGCGGGUCg -3'
miRNA:   3'- uUGaaCCGGUCGCU---GUCG---GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 2444 0.7 0.50643
Target:  5'- ----cGGCUGGCGGCgccAGCCGCccugcGGGUCg -3'
miRNA:   3'- uugaaCCGGUCGCUG---UCGGCG-----UCCAG- -5'
5114 3' -59 NC_001798.1 + 2486 0.67 0.647551
Target:  5'- ----gGGCCGGCGGguCAgcGCCGCGGGg- -3'
miRNA:   3'- uugaaCCGGUCGCU--GU--CGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 2546 0.69 0.576036
Target:  5'- gGGCgcGGCCcccgcgggAGgGGCGGCCGCGGGg- -3'
miRNA:   3'- -UUGaaCCGG--------UCgCUGUCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 2687 0.66 0.746906
Target:  5'- gGGCgcGGCgAGCGAguCGGCCGCGGcgacgguGUCg -3'
miRNA:   3'- -UUGaaCCGgUCGCU--GUCGGCGUC-------CAG- -5'
5114 3' -59 NC_001798.1 + 3030 0.75 0.270069
Target:  5'- gGGCUccGGCCAGCcccggcACGGCCGCcAGGUCg -3'
miRNA:   3'- -UUGAa-CCGGUCGc-----UGUCGGCG-UCCAG- -5'
5114 3' -59 NC_001798.1 + 3310 0.67 0.647551
Target:  5'- cGACggcaacgGGgCGGCGGCGGCgGCGGGc- -3'
miRNA:   3'- -UUGaa-----CCgGUCGCUGUCGgCGUCCag -5'
5114 3' -59 NC_001798.1 + 3497 0.66 0.72833
Target:  5'- cGGCUcaUGGCCA-CGGCGGCCGCcacgugcgccAGGcCc -3'
miRNA:   3'- -UUGA--ACCGGUcGCUGUCGGCG----------UCCaG- -5'
5114 3' -59 NC_001798.1 + 8847 0.67 0.688316
Target:  5'- -uCUUGGUCGGCG--GGCCgGgAGGUCa -3'
miRNA:   3'- uuGAACCGGUCGCugUCGG-CgUCCAG- -5'
5114 3' -59 NC_001798.1 + 19745 0.66 0.72833
Target:  5'- cGCUcaUGGCCGGaGAaauguguGGCCGCAGGg- -3'
miRNA:   3'- uUGA--ACCGGUCgCUg------UCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 23706 0.66 0.718428
Target:  5'- cGCUUcacGGCCGG--GCGGCCccgGCGGGUCg -3'
miRNA:   3'- uUGAA---CCGGUCgcUGUCGG---CGUCCAG- -5'
5114 3' -59 NC_001798.1 + 24834 0.7 0.477685
Target:  5'- uGCgcgUGGCCGGCGGCagcgaGGCCGCcguGGcCg -3'
miRNA:   3'- uUGa--ACCGGUCGCUG-----UCGGCGu--CCaG- -5'
5114 3' -59 NC_001798.1 + 27222 0.68 0.596375
Target:  5'- gGGCggGGCgCGGgggaGGCGGCCGCGGGg- -3'
miRNA:   3'- -UUGaaCCG-GUCg---CUGUCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 28787 0.73 0.332688
Target:  5'- ----aGGCggCGGCGGCGGCgCGCGGGUCc -3'
miRNA:   3'- uugaaCCG--GUCGCUGUCG-GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 30917 0.67 0.678172
Target:  5'- uGACcUGGCCgacGGUGAgGGCgGCggGGGUCg -3'
miRNA:   3'- -UUGaACCGG---UCGCUgUCGgCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 32799 0.71 0.431665
Target:  5'- ----cGGCCGGCGACGcccCCGCGGGcCa -3'
miRNA:   3'- uugaaCCGGUCGCUGUc--GGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 34608 0.69 0.565923
Target:  5'- gGACgcgGGCaaagGGCGGCGGCgGCGGGg- -3'
miRNA:   3'- -UUGaa-CCGg---UCGCUGUCGgCGUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.