Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 3' | -59 | NC_001798.1 | + | 63 | 0.7 | 0.496763 |
Target: 5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3' miRNA: 3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 1636 | 0.66 | 0.72833 |
Target: 5'- ----aGGCgCAGCGGCGGCgCGUcgGGGUa -3' miRNA: 3'- uugaaCCG-GUCGCUGUCG-GCG--UCCAg -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 1721 | 0.69 | 0.545844 |
Target: 5'- ----aGGCCAGC-ACGGUgcggCGCAGGUCc -3' miRNA: 3'- uugaaCCGGUCGcUGUCG----GCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 2286 | 0.75 | 0.251413 |
Target: 5'- cGCgcGGCCAGCGAggcCAGCgcgCGCGGGUCg -3' miRNA: 3'- uUGaaCCGGUCGCU---GUCG---GCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 2444 | 0.7 | 0.50643 |
Target: 5'- ----cGGCUGGCGGCgccAGCCGCccugcGGGUCg -3' miRNA: 3'- uugaaCCGGUCGCUG---UCGGCG-----UCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 2486 | 0.67 | 0.647551 |
Target: 5'- ----gGGCCGGCGGguCAgcGCCGCGGGg- -3' miRNA: 3'- uugaaCCGGUCGCU--GU--CGGCGUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 2546 | 0.69 | 0.576036 |
Target: 5'- gGGCgcGGCCcccgcgggAGgGGCGGCCGCGGGg- -3' miRNA: 3'- -UUGaaCCGG--------UCgCUGUCGGCGUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 2687 | 0.66 | 0.746906 |
Target: 5'- gGGCgcGGCgAGCGAguCGGCCGCGGcgacgguGUCg -3' miRNA: 3'- -UUGaaCCGgUCGCU--GUCGGCGUC-------CAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 3030 | 0.75 | 0.270069 |
Target: 5'- gGGCUccGGCCAGCcccggcACGGCCGCcAGGUCg -3' miRNA: 3'- -UUGAa-CCGGUCGc-----UGUCGGCG-UCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 3310 | 0.67 | 0.647551 |
Target: 5'- cGACggcaacgGGgCGGCGGCGGCgGCGGGc- -3' miRNA: 3'- -UUGaa-----CCgGUCGCUGUCGgCGUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 3497 | 0.66 | 0.72833 |
Target: 5'- cGGCUcaUGGCCA-CGGCGGCCGCcacgugcgccAGGcCc -3' miRNA: 3'- -UUGA--ACCGGUcGCUGUCGGCG----------UCCaG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 8847 | 0.67 | 0.688316 |
Target: 5'- -uCUUGGUCGGCG--GGCCgGgAGGUCa -3' miRNA: 3'- uuGAACCGGUCGCugUCGG-CgUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 19745 | 0.66 | 0.72833 |
Target: 5'- cGCUcaUGGCCGGaGAaauguguGGCCGCAGGg- -3' miRNA: 3'- uUGA--ACCGGUCgCUg------UCGGCGUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 23706 | 0.66 | 0.718428 |
Target: 5'- cGCUUcacGGCCGG--GCGGCCccgGCGGGUCg -3' miRNA: 3'- uUGAA---CCGGUCgcUGUCGG---CGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 24834 | 0.7 | 0.477685 |
Target: 5'- uGCgcgUGGCCGGCGGCagcgaGGCCGCcguGGcCg -3' miRNA: 3'- uUGa--ACCGGUCGCUG-----UCGGCGu--CCaG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 27222 | 0.68 | 0.596375 |
Target: 5'- gGGCggGGCgCGGgggaGGCGGCCGCGGGg- -3' miRNA: 3'- -UUGaaCCG-GUCg---CUGUCGGCGUCCag -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 28787 | 0.73 | 0.332688 |
Target: 5'- ----aGGCggCGGCGGCGGCgCGCGGGUCc -3' miRNA: 3'- uugaaCCG--GUCGCUGUCG-GCGUCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 30917 | 0.67 | 0.678172 |
Target: 5'- uGACcUGGCCgacGGUGAgGGCgGCggGGGUCg -3' miRNA: 3'- -UUGaACCGG---UCGCUgUCGgCG--UCCAG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 32799 | 0.71 | 0.431665 |
Target: 5'- ----cGGCCGGCGACGcccCCGCGGGcCa -3' miRNA: 3'- uugaaCCGGUCGCUGUc--GGCGUCCaG- -5' |
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5114 | 3' | -59 | NC_001798.1 | + | 34608 | 0.69 | 0.565923 |
Target: 5'- gGACgcgGGCaaagGGCGGCGGCgGCGGGg- -3' miRNA: 3'- -UUGaa-CCGg---UCGCUGUCGgCGUCCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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