miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 143191 1.06 0.00187
Target:  5'- gAACUUGGCCAGCGACAGCCGCAGGUCc -3'
miRNA:   3'- -UUGAACCGGUCGCUGUCGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 56784 0.76 0.222694
Target:  5'- gGGCccUGGCCGcCGACGGCCGCggAGGUCa -3'
miRNA:   3'- -UUGa-ACCGGUcGCUGUCGGCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 2286 0.75 0.251413
Target:  5'- cGCgcGGCCAGCGAggcCAGCgcgCGCGGGUCg -3'
miRNA:   3'- uUGaaCCGGUCGCU---GUCG---GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 3030 0.75 0.270069
Target:  5'- gGGCUccGGCCAGCcccggcACGGCCGCcAGGUCg -3'
miRNA:   3'- -UUGAa-CCGGUCGc-----UGUCGGCG-UCCAG- -5'
5114 3' -59 NC_001798.1 + 146558 0.73 0.325232
Target:  5'- uGGCcgcgGGCCAGCaGACgGGCCGCGGGcCa -3'
miRNA:   3'- -UUGaa--CCGGUCG-CUG-UCGGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 28787 0.73 0.332688
Target:  5'- ----aGGCggCGGCGGCGGCgCGCGGGUCc -3'
miRNA:   3'- uugaaCCG--GUCGCUGUCG-GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 60525 0.72 0.391702
Target:  5'- gGGCcUGGCCcGUGACcgucagcuccacccGCCGCAGGUCa -3'
miRNA:   3'- -UUGaACCGGuCGCUGu-------------CGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 32799 0.71 0.431665
Target:  5'- ----cGGCCGGCGACGcccCCGCGGGcCa -3'
miRNA:   3'- uugaaCCGGUCGCUGUc--GGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 143132 0.7 0.474855
Target:  5'- cGCUUGcGCUGGCGcGCGGCCGUccccgaaaacgacgAGGUCu -3'
miRNA:   3'- uUGAAC-CGGUCGC-UGUCGGCG--------------UCCAG- -5'
5114 3' -59 NC_001798.1 + 24834 0.7 0.477685
Target:  5'- uGCgcgUGGCCGGCGGCagcgaGGCCGCcguGGcCg -3'
miRNA:   3'- uUGa--ACCGGUCGCUG-----UCGGCGu--CCaG- -5'
5114 3' -59 NC_001798.1 + 149997 0.7 0.477685
Target:  5'- gGACgccggGGCgAGCGGCccguGGCCGC-GGUCg -3'
miRNA:   3'- -UUGaa---CCGgUCGCUG----UCGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 76156 0.7 0.48718
Target:  5'- ----aGGCCAGCGACAGCCaCGacuGUCg -3'
miRNA:   3'- uugaaCCGGUCGCUGUCGGcGUc--CAG- -5'
5114 3' -59 NC_001798.1 + 154401 0.7 0.496763
Target:  5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3'
miRNA:   3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 58698 0.7 0.496763
Target:  5'- ----gGGCC-GCGGCGGCgCGgGGGUCg -3'
miRNA:   3'- uugaaCCGGuCGCUGUCG-GCgUCCAG- -5'
5114 3' -59 NC_001798.1 + 63 0.7 0.496763
Target:  5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3'
miRNA:   3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 2444 0.7 0.50643
Target:  5'- ----cGGCUGGCGGCgccAGCCGCccugcGGGUCg -3'
miRNA:   3'- uugaaCCGGUCGCUG---UCGGCG-----UCCAG- -5'
5114 3' -59 NC_001798.1 + 1721 0.69 0.545844
Target:  5'- ----aGGCCAGC-ACGGUgcggCGCAGGUCc -3'
miRNA:   3'- uugaaCCGGUCGcUGUCG----GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 97470 0.69 0.545844
Target:  5'- cGGCUgggGGCCGGCGGCGcGaCCGgGGGg- -3'
miRNA:   3'- -UUGAa--CCGGUCGCUGU-C-GGCgUCCag -5'
5114 3' -59 NC_001798.1 + 34608 0.69 0.565923
Target:  5'- gGACgcgGGCaaagGGCGGCGGCgGCGGGg- -3'
miRNA:   3'- -UUGaa-CCGg---UCGCUGUCGgCGUCCag -5'
5114 3' -59 NC_001798.1 + 60172 0.69 0.565923
Target:  5'- cGCUUGGCCcGCcuucuuCAGCgCGCuGGUCa -3'
miRNA:   3'- uUGAACCGGuCGcu----GUCG-GCGuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.