miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 107413 0.66 0.757498
Target:  5'- gGACUggGGCCGGCuGACGggggucGCCGCGGcGa- -3'
miRNA:   3'- -UUGAa-CCGGUCG-CUGU------CGGCGUC-Cag -5'
5114 3' -59 NC_001798.1 + 54690 0.66 0.708452
Target:  5'- ----cGGCuCAGCGcgaGGCCGCcgGGGUCu -3'
miRNA:   3'- uugaaCCG-GUCGCug-UCGGCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 66025 0.66 0.718428
Target:  5'- ----gGGCgAuGUGGCGcauGCCGCGGGUCg -3'
miRNA:   3'- uugaaCCGgU-CGCUGU---CGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 23706 0.66 0.718428
Target:  5'- cGCUUcacGGCCGG--GCGGCCccgGCGGGUCg -3'
miRNA:   3'- uUGAA---CCGGUCgcUGUCGG---CGUCCAG- -5'
5114 3' -59 NC_001798.1 + 39108 0.66 0.718428
Target:  5'- -cCUUGGCUGuCGACgcGGcCCGCGGGUUg -3'
miRNA:   3'- uuGAACCGGUcGCUG--UC-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 105754 0.66 0.722398
Target:  5'- -----cGCCGGCGACAaaugaguccccgcgcGcCCGCGGGUCc -3'
miRNA:   3'- uugaacCGGUCGCUGU---------------C-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 1636 0.66 0.72833
Target:  5'- ----aGGCgCAGCGGCGGCgCGUcgGGGUa -3'
miRNA:   3'- uugaaCCG-GUCGCUGUCG-GCG--UCCAg -5'
5114 3' -59 NC_001798.1 + 3497 0.66 0.72833
Target:  5'- cGGCUcaUGGCCA-CGGCGGCCGCcacgugcgccAGGcCc -3'
miRNA:   3'- -UUGA--ACCGGUcGCUGUCGGCG----------UCCaG- -5'
5114 3' -59 NC_001798.1 + 19745 0.66 0.72833
Target:  5'- cGCUcaUGGCCGGaGAaauguguGGCCGCAGGg- -3'
miRNA:   3'- uUGA--ACCGGUCgCUg------UCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 36027 0.66 0.72833
Target:  5'- -cCUUGGCUguuuggggGGUGGCGGC-GguGGUCg -3'
miRNA:   3'- uuGAACCGG--------UCGCUGUCGgCguCCAG- -5'
5114 3' -59 NC_001798.1 + 145816 0.66 0.72833
Target:  5'- aAACgcgGGCgCGGCGGCGGUCG-GGGUg -3'
miRNA:   3'- -UUGaa-CCG-GUCGCUGUCGGCgUCCAg -5'
5114 3' -59 NC_001798.1 + 2687 0.66 0.746906
Target:  5'- gGGCgcGGCgAGCGAguCGGCCGCGGcgacgguGUCg -3'
miRNA:   3'- -UUGaaCCGgUCGCU--GUCGGCGUC-------CAG- -5'
5114 3' -59 NC_001798.1 + 55732 0.66 0.747874
Target:  5'- ----cGGCCAGgugcuUGGCGGCCGCAcGGg- -3'
miRNA:   3'- uugaaCCGGUC-----GCUGUCGGCGU-CCag -5'
5114 3' -59 NC_001798.1 + 87198 0.66 0.757498
Target:  5'- cGGC-UGGCCAcCGuCAGCCGCgAGGcCc -3'
miRNA:   3'- -UUGaACCGGUcGCuGUCGGCG-UCCaG- -5'
5114 3' -59 NC_001798.1 + 8847 0.67 0.688316
Target:  5'- -uCUUGGUCGGCG--GGCCgGgAGGUCa -3'
miRNA:   3'- uuGAACCGGUCGCugUCGG-CgUCCAG- -5'
5114 3' -59 NC_001798.1 + 83328 0.67 0.688316
Target:  5'- gAACgagGGCCgcAGCcauuCGGCCGCGGcGUCg -3'
miRNA:   3'- -UUGaa-CCGG--UCGcu--GUCGGCGUC-CAG- -5'
5114 3' -59 NC_001798.1 + 147032 0.67 0.697404
Target:  5'- gGGCUUGGCCGccgagguGCGcccCGGCCGgAGGg- -3'
miRNA:   3'- -UUGAACCGGU-------CGCu--GUCGGCgUCCag -5'
5114 3' -59 NC_001798.1 + 151606 0.67 0.698412
Target:  5'- cGCUcGGCCGGgGGCcgGGCCGgGGG-Cg -3'
miRNA:   3'- uUGAaCCGGUCgCUG--UCGGCgUCCaG- -5'
5114 3' -59 NC_001798.1 + 91364 0.67 0.698412
Target:  5'- aAGCcgGGCCGcccGCGGCAcaaaacaucGCCGCcGGUCg -3'
miRNA:   3'- -UUGaaCCGGU---CGCUGU---------CGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 43296 0.67 0.685277
Target:  5'- ----cGGCCAGCuugaggaggcgcuuGACGauuCCGCAGGUCu -3'
miRNA:   3'- uugaaCCGGUCG--------------CUGUc--GGCGUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.