miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 154401 0.7 0.496763
Target:  5'- cGCgaaGGCgGGCGGCGGCgGCGGG-Cg -3'
miRNA:   3'- uUGaa-CCGgUCGCUGUCGgCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 151606 0.67 0.698412
Target:  5'- cGCUcGGCCGGgGGCcgGGCCGgGGG-Cg -3'
miRNA:   3'- uUGAaCCGGUCgCUG--UCGGCgUCCaG- -5'
5114 3' -59 NC_001798.1 + 149997 0.7 0.477685
Target:  5'- gGACgccggGGCgAGCGGCccguGGCCGC-GGUCg -3'
miRNA:   3'- -UUGaa---CCGgUCGCUG----UCGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 147985 0.67 0.698412
Target:  5'- aGGCgcgUGcCCGGCcACAGCCGUGGGUg -3'
miRNA:   3'- -UUGa--ACcGGUCGcUGUCGGCGUCCAg -5'
5114 3' -59 NC_001798.1 + 147032 0.67 0.697404
Target:  5'- gGGCUUGGCCGccgagguGCGcccCGGCCGgAGGg- -3'
miRNA:   3'- -UUGAACCGGU-------CGCu--GUCGGCgUCCag -5'
5114 3' -59 NC_001798.1 + 146558 0.73 0.325232
Target:  5'- uGGCcgcgGGCCAGCaGACgGGCCGCGGGcCa -3'
miRNA:   3'- -UUGaa--CCGGUCG-CUG-UCGGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 145816 0.66 0.72833
Target:  5'- aAACgcgGGCgCGGCGGCGGUCG-GGGUg -3'
miRNA:   3'- -UUGaa-CCG-GUCGCUGUCGGCgUCCAg -5'
5114 3' -59 NC_001798.1 + 143191 1.06 0.00187
Target:  5'- gAACUUGGCCAGCGACAGCCGCAGGUCc -3'
miRNA:   3'- -UUGAACCGGUCGCUGUCGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 143132 0.7 0.474855
Target:  5'- cGCUUGcGCUGGCGcGCGGCCGUccccgaaaacgacgAGGUCu -3'
miRNA:   3'- uUGAAC-CGGUCGC-UGUCGGCG--------------UCCAG- -5'
5114 3' -59 NC_001798.1 + 133462 0.67 0.657782
Target:  5'- aAGCgcgUGGCCgacgcccugAGCGGCuGCCccccgcGCGGGUCc -3'
miRNA:   3'- -UUGa--ACCGG---------UCGCUGuCGG------CGUCCAG- -5'
5114 3' -59 NC_001798.1 + 117676 0.67 0.657782
Target:  5'- gGACgcgcGGCCGGCGGCGuGUaCGCGGGg- -3'
miRNA:   3'- -UUGaa--CCGGUCGCUGU-CG-GCGUCCag -5'
5114 3' -59 NC_001798.1 + 107413 0.66 0.757498
Target:  5'- gGACUggGGCCGGCuGACGggggucGCCGCGGcGa- -3'
miRNA:   3'- -UUGAa-CCGGUCG-CUGU------CGGCGUC-Cag -5'
5114 3' -59 NC_001798.1 + 105754 0.66 0.722398
Target:  5'- -----cGCCGGCGACAaaugaguccccgcgcGcCCGCGGGUCc -3'
miRNA:   3'- uugaacCGGUCGCUGU---------------C-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 105277 0.67 0.647551
Target:  5'- -uCUUcGGCC-GCGGCcGCCGC-GGUCu -3'
miRNA:   3'- uuGAA-CCGGuCGCUGuCGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 102542 0.67 0.647551
Target:  5'- ----cGGCCGGCa--GGCCGCAcgcGGUCa -3'
miRNA:   3'- uugaaCCGGUCGcugUCGGCGU---CCAG- -5'
5114 3' -59 NC_001798.1 + 100287 0.67 0.677156
Target:  5'- cAGCUcgcGGCCGGgGACgugcuacAGCCGCccccuGGUCa -3'
miRNA:   3'- -UUGAa--CCGGUCgCUG-------UCGGCGu----CCAG- -5'
5114 3' -59 NC_001798.1 + 97470 0.69 0.545844
Target:  5'- cGGCUgggGGCCGGCGGCGcGaCCGgGGGg- -3'
miRNA:   3'- -UUGAa--CCGGUCGCUGU-C-GGCgUCCag -5'
5114 3' -59 NC_001798.1 + 95107 0.68 0.627061
Target:  5'- uGCUgcGGCCcGUGAUGGCCGCGcgcccgauGGUCg -3'
miRNA:   3'- uUGAa-CCGGuCGCUGUCGGCGU--------CCAG- -5'
5114 3' -59 NC_001798.1 + 91364 0.67 0.698412
Target:  5'- aAGCcgGGCCGcccGCGGCAcaaaacaucGCCGCcGGUCg -3'
miRNA:   3'- -UUGaaCCGGU---CGCUGU---------CGGCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 88402 0.67 0.657782
Target:  5'- cGCUcGGCUAacGCGGCGGCCGCuccGGa- -3'
miRNA:   3'- uUGAaCCGGU--CGCUGUCGGCGu--CCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.