miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 3' -59 NC_001798.1 + 88030 0.69 0.565923
Target:  5'- cGCUUGGCCGGgGAgggcagGGCCGCuGGg- -3'
miRNA:   3'- uUGAACCGGUCgCUg-----UCGGCGuCCag -5'
5114 3' -59 NC_001798.1 + 87198 0.66 0.757498
Target:  5'- cGGC-UGGCCAcCGuCAGCCGCgAGGcCc -3'
miRNA:   3'- -UUGaACCGGUcGCuGUCGGCG-UCCaG- -5'
5114 3' -59 NC_001798.1 + 83328 0.67 0.688316
Target:  5'- gAACgagGGCCgcAGCcauuCGGCCGCGGcGUCg -3'
miRNA:   3'- -UUGaa-CCGG--UCGcu--GUCGGCGUC-CAG- -5'
5114 3' -59 NC_001798.1 + 76156 0.7 0.48718
Target:  5'- ----aGGCCAGCGACAGCCaCGacuGUCg -3'
miRNA:   3'- uugaaCCGGUCGCUGUCGGcGUc--CAG- -5'
5114 3' -59 NC_001798.1 + 66025 0.66 0.718428
Target:  5'- ----gGGCgAuGUGGCGcauGCCGCGGGUCg -3'
miRNA:   3'- uugaaCCGgU-CGCUGU---CGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 60525 0.72 0.391702
Target:  5'- gGGCcUGGCCcGUGACcgucagcuccacccGCCGCAGGUCa -3'
miRNA:   3'- -UUGaACCGGuCGCUGu-------------CGGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 60172 0.69 0.565923
Target:  5'- cGCUUGGCCcGCcuucuuCAGCgCGCuGGUCa -3'
miRNA:   3'- uUGAACCGGuCGcu----GUCG-GCGuCCAG- -5'
5114 3' -59 NC_001798.1 + 58698 0.7 0.496763
Target:  5'- ----gGGCC-GCGGCGGCgCGgGGGUCg -3'
miRNA:   3'- uugaaCCGGuCGCUGUCG-GCgUCCAG- -5'
5114 3' -59 NC_001798.1 + 56784 0.76 0.222694
Target:  5'- gGGCccUGGCCGcCGACGGCCGCggAGGUCa -3'
miRNA:   3'- -UUGa-ACCGGUcGCUGUCGGCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 55732 0.66 0.747874
Target:  5'- ----cGGCCAGgugcuUGGCGGCCGCAcGGg- -3'
miRNA:   3'- uugaaCCGGUC-----GCUGUCGGCGU-CCag -5'
5114 3' -59 NC_001798.1 + 54690 0.66 0.708452
Target:  5'- ----cGGCuCAGCGcgaGGCCGCcgGGGUCu -3'
miRNA:   3'- uugaaCCG-GUCGCug-UCGGCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 43296 0.67 0.685277
Target:  5'- ----cGGCCAGCuugaggaggcgcuuGACGauuCCGCAGGUCu -3'
miRNA:   3'- uugaaCCGGUCG--------------CUGUc--GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 39108 0.66 0.718428
Target:  5'- -cCUUGGCUGuCGACgcGGcCCGCGGGUUg -3'
miRNA:   3'- uuGAACCGGUcGCUG--UC-GGCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 36027 0.66 0.72833
Target:  5'- -cCUUGGCUguuuggggGGUGGCGGC-GguGGUCg -3'
miRNA:   3'- uuGAACCGG--------UCGCUGUCGgCguCCAG- -5'
5114 3' -59 NC_001798.1 + 34608 0.69 0.565923
Target:  5'- gGACgcgGGCaaagGGCGGCGGCgGCGGGg- -3'
miRNA:   3'- -UUGaa-CCGg---UCGCUGUCGgCGUCCag -5'
5114 3' -59 NC_001798.1 + 32799 0.71 0.431665
Target:  5'- ----cGGCCGGCGACGcccCCGCGGGcCa -3'
miRNA:   3'- uugaaCCGGUCGCUGUc--GGCGUCCaG- -5'
5114 3' -59 NC_001798.1 + 30917 0.67 0.678172
Target:  5'- uGACcUGGCCgacGGUGAgGGCgGCggGGGUCg -3'
miRNA:   3'- -UUGaACCGG---UCGCUgUCGgCG--UCCAG- -5'
5114 3' -59 NC_001798.1 + 28787 0.73 0.332688
Target:  5'- ----aGGCggCGGCGGCGGCgCGCGGGUCc -3'
miRNA:   3'- uugaaCCG--GUCGCUGUCG-GCGUCCAG- -5'
5114 3' -59 NC_001798.1 + 27222 0.68 0.596375
Target:  5'- gGGCggGGCgCGGgggaGGCGGCCGCGGGg- -3'
miRNA:   3'- -UUGaaCCG-GUCg---CUGUCGGCGUCCag -5'
5114 3' -59 NC_001798.1 + 24834 0.7 0.477685
Target:  5'- uGCgcgUGGCCGGCGGCagcgaGGCCGCcguGGcCg -3'
miRNA:   3'- uUGa--ACCGGUCGCUG-----UCGGCGu--CCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.