miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 25080 0.72 0.349348
Target:  5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3'
miRNA:   3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 51174 0.73 0.305995
Target:  5'- -cGUCCGaggcccGGGC-GGCGGCGCCCCc- -3'
miRNA:   3'- caUAGGCa-----CUCGaCCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 79959 0.73 0.292489
Target:  5'- -cGUCCG-GAGC-GGCGGCGCCgCGu -3'
miRNA:   3'- caUAGGCaCUCGaCCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 23561 0.74 0.266885
Target:  5'- gGUGcCCGcgaGGGCcccgggGGCGGCGCCCCGGc -3'
miRNA:   3'- -CAUaGGCa--CUCGa-----CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 15252 0.77 0.161142
Target:  5'- -gGUCCGUuggggGGGUacgGGCGGUGCCCCGGg -3'
miRNA:   3'- caUAGGCA-----CUCGa--CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 143227 1.08 0.001232
Target:  5'- cGUAUCCGUGAGCUGGCGGCGCCCCAGu -3'
miRNA:   3'- -CAUAGGCACUCGACCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 111584 0.67 0.654465
Target:  5'- --cUCCcUGAGCggggggcccggcggGGCGGCcuccuggaGCCCCGGg -3'
miRNA:   3'- cauAGGcACUCGa-------------CCGCCG--------CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 31866 0.66 0.699937
Target:  5'- ---gCCGcgGAGggGGCGGCGgCCCGc -3'
miRNA:   3'- cauaGGCa-CUCgaCCGCCGCgGGGUc -5'
5114 5' -60.8 NC_001798.1 + 50101 0.66 0.699937
Target:  5'- ---gCCG--GGCUGGUGGCGCCgCGc -3'
miRNA:   3'- cauaGGCacUCGACCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 53594 0.66 0.690122
Target:  5'- ---cCCGaagcuGCUGGUGcGCGCCCCGu -3'
miRNA:   3'- cauaGGCacu--CGACCGC-CGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 150041 0.66 0.68026
Target:  5'- -aGUCCG-GGGCccgGcGCGGCGCCgCCc- -3'
miRNA:   3'- caUAGGCaCUCGa--C-CGCCGCGG-GGuc -5'
5114 5' -60.8 NC_001798.1 + 24409 0.66 0.68026
Target:  5'- ---gCCGUcGGC-GGCGGCGUCgCCGGc -3'
miRNA:   3'- cauaGGCAcUCGaCCGCCGCGG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 4882 0.66 0.68026
Target:  5'- -gGUCCGUcGGCUGGauccggagaucCGGgGCCgCCGGu -3'
miRNA:   3'- caUAGGCAcUCGACC-----------GCCgCGG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 2971 0.66 0.68026
Target:  5'- -cGUCggCGUGcGGCggGGCGGCcggcccgcggGCCCCGGg -3'
miRNA:   3'- caUAG--GCAC-UCGa-CCGCCG----------CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 28946 0.66 0.670361
Target:  5'- aUAUCCGcgaGGGCccGGCGcCGCCCCGc -3'
miRNA:   3'- cAUAGGCa--CUCGa-CCGCcGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 66536 0.66 0.670361
Target:  5'- --cUCCGUGAgGCgGGgGGCGCUgCCGa -3'
miRNA:   3'- cauAGGCACU-CGaCCgCCGCGG-GGUc -5'
5114 5' -60.8 NC_001798.1 + 15419 0.66 0.670361
Target:  5'- -gGUCCGggagGGGUUGuuUGGgGCCCCGGa -3'
miRNA:   3'- caUAGGCa---CUCGACc-GCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 58538 0.66 0.660433
Target:  5'- -gGUCCGUGGucuGUUGGCcgcucGGCGuCCuCCGGg -3'
miRNA:   3'- caUAGGCACU---CGACCG-----CCGC-GG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 104162 0.66 0.658445
Target:  5'- ---cCCGccUGGGCguccaggcacagGGCGGCcaGCCCCGGa -3'
miRNA:   3'- cauaGGC--ACUCGa-----------CCGCCG--CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 2603 0.66 0.713586
Target:  5'- --cUUCGggGGGCgcggggcgccgcccGGCGGCGCCCUGGc -3'
miRNA:   3'- cauAGGCa-CUCGa-------------CCGCCGCGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.