miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 43022 0.68 0.561177
Target:  5'- ---cCCGgGGGgaGcGCGGgGCCCCGGg -3'
miRNA:   3'- cauaGGCaCUCgaC-CGCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 47869 0.68 0.561177
Target:  5'- ---cCCGUGGGCgccGGCGGgcgcucgcaCGCCCCu- -3'
miRNA:   3'- cauaGGCACUCGa--CCGCC---------GCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 50101 0.66 0.699937
Target:  5'- ---gCCG--GGCUGGUGGCGCCgCGc -3'
miRNA:   3'- cauaGGCacUCGACCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 51174 0.73 0.305995
Target:  5'- -cGUCCGaggcccGGGC-GGCGGCGCCCCc- -3'
miRNA:   3'- caUAGGCa-----CUCGaCCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 52792 0.68 0.580856
Target:  5'- ---cCCGUGAGCgGGaCGGCaGaCCCCGc -3'
miRNA:   3'- cauaGGCACUCGaCC-GCCG-C-GGGGUc -5'
5114 5' -60.8 NC_001798.1 + 53315 0.67 0.630549
Target:  5'- -cGUCCG---GCUGGCGGCGCggcaCCAu -3'
miRNA:   3'- caUAGGCacuCGACCGCCGCGg---GGUc -5'
5114 5' -60.8 NC_001798.1 + 53594 0.66 0.690122
Target:  5'- ---cCCGaagcuGCUGGUGcGCGCCCCGu -3'
miRNA:   3'- cauaGGCacu--CGACCGC-CGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 57150 0.68 0.561177
Target:  5'- aGUAcagCCGcGGGCUGGCgcccgggccGGCGCCCUc- -3'
miRNA:   3'- -CAUa--GGCaCUCGACCG---------CCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 58538 0.66 0.660433
Target:  5'- -gGUCCGUGGucuGUUGGCcgcucGGCGuCCuCCGGg -3'
miRNA:   3'- caUAGGCACU---CGACCG-----CCGC-GG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 64818 0.71 0.42219
Target:  5'- cGUA-CCGcGGGCUGGCGuucgaaaaGCGCuCCCAGu -3'
miRNA:   3'- -CAUaGGCaCUCGACCGC--------CGCG-GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 66536 0.66 0.670361
Target:  5'- --cUCCGUGAgGCgGGgGGCGCUgCCGa -3'
miRNA:   3'- cauAGGCACU-CGaCCgCCGCGG-GGUc -5'
5114 5' -60.8 NC_001798.1 + 70607 0.67 0.630549
Target:  5'- aGUGUgCCGUGGaguggaucgaccGCUGGCGGacCGUcaCCCAGa -3'
miRNA:   3'- -CAUA-GGCACU------------CGACCGCC--GCG--GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 71586 0.67 0.616594
Target:  5'- cGgcUCUGUGAgGCggucggccugucgGGCGGCGUCCuCAGc -3'
miRNA:   3'- -CauAGGCACU-CGa------------CCGCCGCGGG-GUC- -5'
5114 5' -60.8 NC_001798.1 + 72803 0.69 0.48475
Target:  5'- --uUCC-UGGcgcGCUGGCGGCGCCUCu- -3'
miRNA:   3'- cauAGGcACU---CGACCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 79959 0.73 0.292489
Target:  5'- -cGUCCG-GAGC-GGCGGCGCCgCGu -3'
miRNA:   3'- caUAGGCaCUCGaCCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 83850 0.71 0.396902
Target:  5'- -cGUCCGggcgGcGCUGGCGG-GCCCgAGg -3'
miRNA:   3'- caUAGGCa---CuCGACCGCCgCGGGgUC- -5'
5114 5' -60.8 NC_001798.1 + 87902 0.68 0.590751
Target:  5'- -aGUCCGU--GUUGaGCGGaaCGCCCCGGg -3'
miRNA:   3'- caUAGGCAcuCGAC-CGCC--GCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 102054 0.68 0.561177
Target:  5'- cGUGUCUGcgugGGGgUGGUGGUaggGCCCCAc -3'
miRNA:   3'- -CAUAGGCa---CUCgACCGCCG---CGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 104162 0.66 0.658445
Target:  5'- ---cCCGccUGGGCguccaggcacagGGCGGCcaGCCCCGGa -3'
miRNA:   3'- cauaGGC--ACUCGa-----------CCGCCG--CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 108756 0.68 0.561177
Target:  5'- -cAUCCGUGAcCUGGCuGGC-CgCCAGg -3'
miRNA:   3'- caUAGGCACUcGACCG-CCGcGgGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.