Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 5' | -60.8 | NC_001798.1 | + | 66536 | 0.66 | 0.670361 |
Target: 5'- --cUCCGUGAgGCgGGgGGCGCUgCCGa -3' miRNA: 3'- cauAGGCACU-CGaCCgCCGCGG-GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 64818 | 0.71 | 0.42219 |
Target: 5'- cGUA-CCGcGGGCUGGCGuucgaaaaGCGCuCCCAGu -3' miRNA: 3'- -CAUaGGCaCUCGACCGC--------CGCG-GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 58538 | 0.66 | 0.660433 |
Target: 5'- -gGUCCGUGGucuGUUGGCcgcucGGCGuCCuCCGGg -3' miRNA: 3'- caUAGGCACU---CGACCG-----CCGC-GG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 57150 | 0.68 | 0.561177 |
Target: 5'- aGUAcagCCGcGGGCUGGCgcccgggccGGCGCCCUc- -3' miRNA: 3'- -CAUa--GGCaCUCGACCG---------CCGCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 53594 | 0.66 | 0.690122 |
Target: 5'- ---cCCGaagcuGCUGGUGcGCGCCCCGu -3' miRNA: 3'- cauaGGCacu--CGACCGC-CGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 53315 | 0.67 | 0.630549 |
Target: 5'- -cGUCCG---GCUGGCGGCGCggcaCCAu -3' miRNA: 3'- caUAGGCacuCGACCGCCGCGg---GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 52792 | 0.68 | 0.580856 |
Target: 5'- ---cCCGUGAGCgGGaCGGCaGaCCCCGc -3' miRNA: 3'- cauaGGCACUCGaCC-GCCG-C-GGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 51174 | 0.73 | 0.305995 |
Target: 5'- -cGUCCGaggcccGGGC-GGCGGCGCCCCc- -3' miRNA: 3'- caUAGGCa-----CUCGaCCGCCGCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 50101 | 0.66 | 0.699937 |
Target: 5'- ---gCCG--GGCUGGUGGCGCCgCGc -3' miRNA: 3'- cauaGGCacUCGACCGCCGCGGgGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 47869 | 0.68 | 0.561177 |
Target: 5'- ---cCCGUGGGCgccGGCGGgcgcucgcaCGCCCCu- -3' miRNA: 3'- cauaGGCACUCGa--CCGCC---------GCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 43022 | 0.68 | 0.561177 |
Target: 5'- ---cCCGgGGGgaGcGCGGgGCCCCGGg -3' miRNA: 3'- cauaGGCaCUCgaC-CGCCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 34998 | 0.69 | 0.522425 |
Target: 5'- --cUCCGgccgGGGCgcaccucGGCGGCcaaGCCCCGGc -3' miRNA: 3'- cauAGGCa---CUCGa------CCGCCG---CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 31866 | 0.66 | 0.699937 |
Target: 5'- ---gCCGcgGAGggGGCGGCGgCCCGc -3' miRNA: 3'- cauaGGCa-CUCgaCCGCCGCgGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 31223 | 0.7 | 0.430832 |
Target: 5'- ---cCCGcgGAGCagcagcagcGGCGGCGCCCCGu -3' miRNA: 3'- cauaGGCa-CUCGa--------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28946 | 0.66 | 0.670361 |
Target: 5'- aUAUCCGcgaGGGCccGGCGcCGCCCCGc -3' miRNA: 3'- cAUAGGCa--CUCGa-CCGCcGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28095 | 0.67 | 0.61062 |
Target: 5'- --cUCCugcgGcGCUGGCugcuGGUGCCCCAGg -3' miRNA: 3'- cauAGGca--CuCGACCG----CCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 25951 | 0.68 | 0.580856 |
Target: 5'- aGUGcgCCGUGcGCUGGcCGGCGgCgCGGg -3' miRNA: 3'- -CAUa-GGCACuCGACC-GCCGCgGgGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 25080 | 0.72 | 0.349348 |
Target: 5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3' miRNA: 3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24878 | 0.69 | 0.494052 |
Target: 5'- ---gCCGUGAGcCUGGUcgccGGgGCCCUGGg -3' miRNA: 3'- cauaGGCACUC-GACCG----CCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24409 | 0.66 | 0.68026 |
Target: 5'- ---gCCGUcGGC-GGCGGCGUCgCCGGc -3' miRNA: 3'- cauaGGCAcUCGaCCGCCGCGG-GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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