Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 5' | -60.8 | NC_001798.1 | + | 2359 | 0.7 | 0.448422 |
Target: 5'- -gGUCCGUGAGCUcGGCcacggcccgcggGGCGCaguaggccUCCAGg -3' miRNA: 3'- caUAGGCACUCGA-CCG------------CCGCG--------GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2439 | 0.69 | 0.512894 |
Target: 5'- ---cCCGgcGGCUGGCGGCGCCagCCGc -3' miRNA: 3'- cauaGGCacUCGACCGCCGCGG--GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2603 | 0.66 | 0.713586 |
Target: 5'- --cUUCGggGGGCgcggggcgccgcccGGCGGCGCCCUGGc -3' miRNA: 3'- cauAGGCa-CUCGa-------------CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2971 | 0.66 | 0.68026 |
Target: 5'- -cGUCggCGUGcGGCggGGCGGCcggcccgcggGCCCCGGg -3' miRNA: 3'- caUAG--GCAC-UCGa-CCGCCG----------CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 3890 | 0.67 | 0.61062 |
Target: 5'- ---cCCGgGGGCgGGgGGCcgGCCCCGGg -3' miRNA: 3'- cauaGGCaCUCGaCCgCCG--CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 4045 | 0.72 | 0.356985 |
Target: 5'- ---gCCGcgcGGGCccGGCGGCGCUCCAGg -3' miRNA: 3'- cauaGGCa--CUCGa-CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 4882 | 0.66 | 0.68026 |
Target: 5'- -gGUCCGUcGGCUGGauccggagaucCGGgGCCgCCGGu -3' miRNA: 3'- caUAGGCAcUCGACC-----------GCCgCGG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15252 | 0.77 | 0.161142 |
Target: 5'- -gGUCCGUuggggGGGUacgGGCGGUGCCCCGGg -3' miRNA: 3'- caUAGGCA-----CUCGa--CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15377 | 0.67 | 0.62058 |
Target: 5'- ---gCCGUGGGCgcGGCggaGGCGCCcaCCGGa -3' miRNA: 3'- cauaGGCACUCGa-CCG---CCGCGG--GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15419 | 0.66 | 0.670361 |
Target: 5'- -gGUCCGggagGGGUUGuuUGGgGCCCCGGa -3' miRNA: 3'- caUAGGCa---CUCGACc-GCCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 23561 | 0.74 | 0.266885 |
Target: 5'- gGUGcCCGcgaGGGCcccgggGGCGGCGCCCCGGc -3' miRNA: 3'- -CAUaGGCa--CUCGa-----CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24409 | 0.66 | 0.68026 |
Target: 5'- ---gCCGUcGGC-GGCGGCGUCgCCGGc -3' miRNA: 3'- cauaGGCAcUCGaCCGCCGCGG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24878 | 0.69 | 0.494052 |
Target: 5'- ---gCCGUGAGcCUGGUcgccGGgGCCCUGGg -3' miRNA: 3'- cauaGGCACUC-GACCG----CCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 25080 | 0.72 | 0.349348 |
Target: 5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3' miRNA: 3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 25951 | 0.68 | 0.580856 |
Target: 5'- aGUGcgCCGUGcGCUGGcCGGCGgCgCGGg -3' miRNA: 3'- -CAUa-GGCACuCGACC-GCCGCgGgGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28095 | 0.67 | 0.61062 |
Target: 5'- --cUCCugcgGcGCUGGCugcuGGUGCCCCAGg -3' miRNA: 3'- cauAGGca--CuCGACCG----CCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28946 | 0.66 | 0.670361 |
Target: 5'- aUAUCCGcgaGGGCccGGCGcCGCCCCGc -3' miRNA: 3'- cAUAGGCa--CUCGa-CCGCcGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 31223 | 0.7 | 0.430832 |
Target: 5'- ---cCCGcgGAGCagcagcagcGGCGGCGCCCCGu -3' miRNA: 3'- cauaGGCa-CUCGa--------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 31866 | 0.66 | 0.699937 |
Target: 5'- ---gCCGcgGAGggGGCGGCGgCCCGc -3' miRNA: 3'- cauaGGCa-CUCgaCCGCCGCgGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 34998 | 0.69 | 0.522425 |
Target: 5'- --cUCCGgccgGGGCgcaccucGGCGGCcaaGCCCCGGc -3' miRNA: 3'- cauAGGCa---CUCGa------CCGCCG---CGGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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