miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 2359 0.7 0.448422
Target:  5'- -gGUCCGUGAGCUcGGCcacggcccgcggGGCGCaguaggccUCCAGg -3'
miRNA:   3'- caUAGGCACUCGA-CCG------------CCGCG--------GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 2439 0.69 0.512894
Target:  5'- ---cCCGgcGGCUGGCGGCGCCagCCGc -3'
miRNA:   3'- cauaGGCacUCGACCGCCGCGG--GGUc -5'
5114 5' -60.8 NC_001798.1 + 2603 0.66 0.713586
Target:  5'- --cUUCGggGGGCgcggggcgccgcccGGCGGCGCCCUGGc -3'
miRNA:   3'- cauAGGCa-CUCGa-------------CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 2971 0.66 0.68026
Target:  5'- -cGUCggCGUGcGGCggGGCGGCcggcccgcggGCCCCGGg -3'
miRNA:   3'- caUAG--GCAC-UCGa-CCGCCG----------CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 3890 0.67 0.61062
Target:  5'- ---cCCGgGGGCgGGgGGCcgGCCCCGGg -3'
miRNA:   3'- cauaGGCaCUCGaCCgCCG--CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 4045 0.72 0.356985
Target:  5'- ---gCCGcgcGGGCccGGCGGCGCUCCAGg -3'
miRNA:   3'- cauaGGCa--CUCGa-CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 4882 0.66 0.68026
Target:  5'- -gGUCCGUcGGCUGGauccggagaucCGGgGCCgCCGGu -3'
miRNA:   3'- caUAGGCAcUCGACC-----------GCCgCGG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 15252 0.77 0.161142
Target:  5'- -gGUCCGUuggggGGGUacgGGCGGUGCCCCGGg -3'
miRNA:   3'- caUAGGCA-----CUCGa--CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 15377 0.67 0.62058
Target:  5'- ---gCCGUGGGCgcGGCggaGGCGCCcaCCGGa -3'
miRNA:   3'- cauaGGCACUCGa-CCG---CCGCGG--GGUC- -5'
5114 5' -60.8 NC_001798.1 + 15419 0.66 0.670361
Target:  5'- -gGUCCGggagGGGUUGuuUGGgGCCCCGGa -3'
miRNA:   3'- caUAGGCa---CUCGACc-GCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 23561 0.74 0.266885
Target:  5'- gGUGcCCGcgaGGGCcccgggGGCGGCGCCCCGGc -3'
miRNA:   3'- -CAUaGGCa--CUCGa-----CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 24409 0.66 0.68026
Target:  5'- ---gCCGUcGGC-GGCGGCGUCgCCGGc -3'
miRNA:   3'- cauaGGCAcUCGaCCGCCGCGG-GGUC- -5'
5114 5' -60.8 NC_001798.1 + 24878 0.69 0.494052
Target:  5'- ---gCCGUGAGcCUGGUcgccGGgGCCCUGGg -3'
miRNA:   3'- cauaGGCACUC-GACCG----CCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 25080 0.72 0.349348
Target:  5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3'
miRNA:   3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 25951 0.68 0.580856
Target:  5'- aGUGcgCCGUGcGCUGGcCGGCGgCgCGGg -3'
miRNA:   3'- -CAUa-GGCACuCGACC-GCCGCgGgGUC- -5'
5114 5' -60.8 NC_001798.1 + 28095 0.67 0.61062
Target:  5'- --cUCCugcgGcGCUGGCugcuGGUGCCCCAGg -3'
miRNA:   3'- cauAGGca--CuCGACCG----CCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 28946 0.66 0.670361
Target:  5'- aUAUCCGcgaGGGCccGGCGcCGCCCCGc -3'
miRNA:   3'- cAUAGGCa--CUCGa-CCGCcGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 31223 0.7 0.430832
Target:  5'- ---cCCGcgGAGCagcagcagcGGCGGCGCCCCGu -3'
miRNA:   3'- cauaGGCa-CUCGa--------CCGCCGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 31866 0.66 0.699937
Target:  5'- ---gCCGcgGAGggGGCGGCGgCCCGc -3'
miRNA:   3'- cauaGGCa-CUCgaCCGCCGCgGGGUc -5'
5114 5' -60.8 NC_001798.1 + 34998 0.69 0.522425
Target:  5'- --cUCCGgccgGGGCgcaccucGGCGGCcaaGCCCCGGc -3'
miRNA:   3'- cauAGGCa---CUCGa------CCGCCG---CGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.