Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5114 | 5' | -60.8 | NC_001798.1 | + | 31866 | 0.66 | 0.699937 |
Target: 5'- ---gCCGcgGAGggGGCGGCGgCCCGc -3' miRNA: 3'- cauaGGCa-CUCgaCCGCCGCgGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 104162 | 0.66 | 0.658445 |
Target: 5'- ---cCCGccUGGGCguccaggcacagGGCGGCcaGCCCCGGa -3' miRNA: 3'- cauaGGC--ACUCGa-----------CCGCCG--CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 58538 | 0.66 | 0.660433 |
Target: 5'- -gGUCCGUGGucuGUUGGCcgcucGGCGuCCuCCGGg -3' miRNA: 3'- caUAGGCACU---CGACCG-----CCGC-GG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15419 | 0.66 | 0.670361 |
Target: 5'- -gGUCCGggagGGGUUGuuUGGgGCCCCGGa -3' miRNA: 3'- caUAGGCa---CUCGACc-GCCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 66536 | 0.66 | 0.670361 |
Target: 5'- --cUCCGUGAgGCgGGgGGCGCUgCCGa -3' miRNA: 3'- cauAGGCACU-CGaCCgCCGCGG-GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 28946 | 0.66 | 0.670361 |
Target: 5'- aUAUCCGcgaGGGCccGGCGcCGCCCCGc -3' miRNA: 3'- cAUAGGCa--CUCGa-CCGCcGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2971 | 0.66 | 0.68026 |
Target: 5'- -cGUCggCGUGcGGCggGGCGGCcggcccgcggGCCCCGGg -3' miRNA: 3'- caUAG--GCAC-UCGa-CCGCCG----------CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 4882 | 0.66 | 0.68026 |
Target: 5'- -gGUCCGUcGGCUGGauccggagaucCGGgGCCgCCGGu -3' miRNA: 3'- caUAGGCAcUCGACC-----------GCCgCGG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24409 | 0.66 | 0.68026 |
Target: 5'- ---gCCGUcGGC-GGCGGCGUCgCCGGc -3' miRNA: 3'- cauaGGCAcUCGaCCGCCGCGG-GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 150041 | 0.66 | 0.68026 |
Target: 5'- -aGUCCG-GGGCccgGcGCGGCGCCgCCc- -3' miRNA: 3'- caUAGGCaCUCGa--C-CGCCGCGG-GGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 53594 | 0.66 | 0.690122 |
Target: 5'- ---cCCGaagcuGCUGGUGcGCGCCCCGu -3' miRNA: 3'- cauaGGCacu--CGACCGC-CGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 50101 | 0.66 | 0.699937 |
Target: 5'- ---gCCG--GGCUGGUGGCGCCgCGc -3' miRNA: 3'- cauaGGCacUCGACCGCCGCGGgGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2603 | 0.66 | 0.713586 |
Target: 5'- --cUUCGggGGGCgcggggcgccgcccGGCGGCGCCCUGGc -3' miRNA: 3'- cauAGGCa-CUCGa-------------CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 111584 | 0.67 | 0.654465 |
Target: 5'- --cUCCcUGAGCggggggcccggcggGGCGGCcuccuggaGCCCCGGg -3' miRNA: 3'- cauAGGcACUCGa-------------CCGCCG--------CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 147225 | 0.67 | 0.640519 |
Target: 5'- ---cCCGgcgGAGCgcgggGGCcccGGgGCCCCGGg -3' miRNA: 3'- cauaGGCa--CUCGa----CCG---CCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 53315 | 0.67 | 0.630549 |
Target: 5'- -cGUCCG---GCUGGCGGCGCggcaCCAu -3' miRNA: 3'- caUAGGCacuCGACCGCCGCGg---GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 70607 | 0.67 | 0.630549 |
Target: 5'- aGUGUgCCGUGGaguggaucgaccGCUGGCGGacCGUcaCCCAGa -3' miRNA: 3'- -CAUA-GGCACU------------CGACCGCC--GCG--GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15377 | 0.67 | 0.62058 |
Target: 5'- ---gCCGUGGGCgcGGCggaGGCGCCcaCCGGa -3' miRNA: 3'- cauaGGCACUCGa-CCG---CCGCGG--GGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 127271 | 0.67 | 0.62058 |
Target: 5'- ----aCGUcGGGCUGGCGGUcgaucucuacGCCCUGGg -3' miRNA: 3'- cauagGCA-CUCGACCGCCG----------CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 71586 | 0.67 | 0.616594 |
Target: 5'- cGgcUCUGUGAgGCggucggccugucgGGCGGCGUCCuCAGc -3' miRNA: 3'- -CauAGGCACU-CGa------------CCGCCGCGGG-GUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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