Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5114 | 5' | -60.8 | NC_001798.1 | + | 143227 | 1.08 | 0.001232 |
Target: 5'- cGUAUCCGUGAGCUGGCGGCGCCCCAGu -3' miRNA: 3'- -CAUAGGCACUCGACCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 15252 | 0.77 | 0.161142 |
Target: 5'- -gGUCCGUuggggGGGUacgGGCGGUGCCCCGGg -3' miRNA: 3'- caUAGGCA-----CUCGa--CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 23561 | 0.74 | 0.266885 |
Target: 5'- gGUGcCCGcgaGGGCcccgggGGCGGCGCCCCGGc -3' miRNA: 3'- -CAUaGGCa--CUCGa-----CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 51174 | 0.73 | 0.305995 |
Target: 5'- -cGUCCGaggcccGGGC-GGCGGCGCCCCc- -3' miRNA: 3'- caUAGGCa-----CUCGaCCGCCGCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 79959 | 0.73 | 0.292489 |
Target: 5'- -cGUCCG-GAGC-GGCGGCGCCgCGu -3' miRNA: 3'- caUAGGCaCUCGaCCGCCGCGGgGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 4045 | 0.72 | 0.356985 |
Target: 5'- ---gCCGcgcGGGCccGGCGGCGCUCCAGg -3' miRNA: 3'- cauaGGCa--CUCGa-CCGCCGCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 25080 | 0.72 | 0.349348 |
Target: 5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3' miRNA: 3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 127923 | 0.71 | 0.388691 |
Target: 5'- ----aCGUGGGCaacccgacGGCGGgGCCCCGGg -3' miRNA: 3'- cauagGCACUCGa-------CCGCCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 83850 | 0.71 | 0.396902 |
Target: 5'- -cGUCCGggcgGcGCUGGCGG-GCCCgAGg -3' miRNA: 3'- caUAGGCa---CuCGACCGCCgCGGGgUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 64818 | 0.71 | 0.42219 |
Target: 5'- cGUA-CCGcGGGCUGGCGuucgaaaaGCGCuCCCAGu -3' miRNA: 3'- -CAUaGGCaCUCGACCGC--------CGCG-GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 31223 | 0.7 | 0.430832 |
Target: 5'- ---cCCGcgGAGCagcagcagcGGCGGCGCCCCGu -3' miRNA: 3'- cauaGGCa-CUCGa--------CCGCCGCGGGGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 113398 | 0.7 | 0.439577 |
Target: 5'- aUGUCaCGUG-GCUGGCacgGGCGCUCCu- -3' miRNA: 3'- cAUAG-GCACuCGACCG---CCGCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2359 | 0.7 | 0.448422 |
Target: 5'- -gGUCCGUGAGCUcGGCcacggcccgcggGGCGCaguaggccUCCAGg -3' miRNA: 3'- caUAGGCACUCGA-CCG------------CCGCG--------GGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 123941 | 0.7 | 0.475532 |
Target: 5'- -gGUCCGgGGGcCUGGUGGCaccuCCCCGGc -3' miRNA: 3'- caUAGGCaCUC-GACCGCCGc---GGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 2439 | 0.69 | 0.512894 |
Target: 5'- ---cCCGgcGGCUGGCGGCGCCagCCGc -3' miRNA: 3'- cauaGGCacUCGACCGCCGCGG--GGUc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 24878 | 0.69 | 0.494052 |
Target: 5'- ---gCCGUGAGcCUGGUcgccGGgGCCCUGGg -3' miRNA: 3'- cauaGGCACUC-GACCG----CCgCGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 72803 | 0.69 | 0.48475 |
Target: 5'- --uUCC-UGGcgcGCUGGCGGCGCCUCu- -3' miRNA: 3'- cauAGGcACU---CGACCGCCGCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 34998 | 0.69 | 0.522425 |
Target: 5'- --cUCCGgccgGGGCgcaccucGGCGGCcaaGCCCCGGc -3' miRNA: 3'- cauAGGCa---CUCGa------CCGCCG---CGGGGUC- -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 47869 | 0.68 | 0.561177 |
Target: 5'- ---cCCGUGGGCgccGGCGGgcgcucgcaCGCCCCu- -3' miRNA: 3'- cauaGGCACUCGa--CCGCC---------GCGGGGuc -5' |
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5114 | 5' | -60.8 | NC_001798.1 | + | 124075 | 0.68 | 0.541686 |
Target: 5'- ---cCCGgGAGgaGGCGGCGCCUg-- -3' miRNA: 3'- cauaGGCaCUCgaCCGCCGCGGGguc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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