miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 4069 0.66 0.683611
Target:  5'- aGGCgGCCCGCGGUcGC-CGCGgGgguCCg -3'
miRNA:   3'- aUUGgCGGGCGUCGaCGaGCGCgU---GG- -5'
5115 3' -60.4 NC_001798.1 + 120188 0.66 0.681624
Target:  5'- gGGCgGCUCGCAGUgauagaagaggaGCUCGgGCcCCg -3'
miRNA:   3'- aUUGgCGGGCGUCGa-----------CGAGCgCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 125745 0.66 0.68063
Target:  5'- -cGCCGCCaCGCGGCccUGCgcCGacguuuggccgagaCGCACCu -3'
miRNA:   3'- auUGGCGG-GCGUCG--ACGa-GC--------------GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 154510 0.66 0.673662
Target:  5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3'
miRNA:   3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 117560 0.66 0.673662
Target:  5'- ---gCGCCCaGguGCcGCg-GCGCGCCg -3'
miRNA:   3'- auugGCGGG-CguCGaCGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 106342 0.66 0.673662
Target:  5'- ---aUGCCCGUgguccGCUGUUCGCGUuugcugGCCg -3'
miRNA:   3'- auugGCGGGCGu----CGACGAGCGCG------UGG- -5'
5115 3' -60.4 NC_001798.1 + 88666 0.66 0.673662
Target:  5'- aUGGCCaccagGCCCGCGGCcgugagGC-CGCgGCACa -3'
miRNA:   3'- -AUUGG-----CGGGCGUCGa-----CGaGCG-CGUGg -5'
5115 3' -60.4 NC_001798.1 + 60210 0.66 0.683611
Target:  5'- gGACCuggGCgCUGguGCUGgaCGaCGCGCCc -3'
miRNA:   3'- aUUGG---CG-GGCguCGACgaGC-GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 90876 0.66 0.683611
Target:  5'- aAAUCGCUCGUggAGCUGggCGgCGCGCa -3'
miRNA:   3'- aUUGGCGGGCG--UCGACgaGC-GCGUGg -5'
5115 3' -60.4 NC_001798.1 + 106212 0.66 0.683611
Target:  5'- gAGCCggGUCaCGCGGCUGa-CGCGCAgCg -3'
miRNA:   3'- aUUGG--CGG-GCGUCGACgaGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 61869 0.66 0.693519
Target:  5'- cGGCCcaGCCCgGCGGCcccCUCggGCGCGCCc -3'
miRNA:   3'- aUUGG--CGGG-CGUCGac-GAG--CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121616 0.66 0.693519
Target:  5'- --cCCGCCaaacacgcgauaCGCGGCcGacggCGCGCGCCu -3'
miRNA:   3'- auuGGCGG------------GCGUCGaCga--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 84685 0.66 0.693519
Target:  5'- gAACCGUUCGCgcuuucgggcgAGCaGCUCGCcguGCACg -3'
miRNA:   3'- aUUGGCGGGCG-----------UCGaCGAGCG---CGUGg -5'
5115 3' -60.4 NC_001798.1 + 32785 0.66 0.693519
Target:  5'- gGGCgCGCCCGCgccGGCcgGCgacgccccCGCGgGCCa -3'
miRNA:   3'- aUUG-GCGGGCG---UCGa-CGa-------GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 27898 0.66 0.693519
Target:  5'- cAGCCGCCCGCca-UGUccCGC-CGCCg -3'
miRNA:   3'- aUUGGCGGGCGucgACGa-GCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 72179 0.66 0.693519
Target:  5'- aUGGCCGacaaCaucgaGCAGCUGCUgCGCGaGCUg -3'
miRNA:   3'- -AUUGGCg---Gg----CGUCGACGA-GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 94993 0.66 0.692531
Target:  5'- cGGCCGCcugggccCCGCAGg-GCggCGCGgGCCu -3'
miRNA:   3'- aUUGGCG-------GGCGUCgaCGa-GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 152384 0.66 0.683611
Target:  5'- gGGCCG-CCGCuccGUcGCUCGCaGUGCCg -3'
miRNA:   3'- aUUGGCgGGCGu--CGaCGAGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 149730 0.66 0.683611
Target:  5'- cGGCC-CCCGCGGCgcaGCa-GCGCggggGCCg -3'
miRNA:   3'- aUUGGcGGGCGUCGa--CGagCGCG----UGG- -5'
5115 3' -60.4 NC_001798.1 + 142693 0.66 0.683611
Target:  5'- --cCCGCCCGCuuGCauauuccCUUGCGCGCg -3'
miRNA:   3'- auuGGCGGGCGu-CGac-----GAGCGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.