miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 134373 0.7 0.459123
Target:  5'- --cCCGCCgGCcGCUcCUCGCGcCGCCc -3'
miRNA:   3'- auuGGCGGgCGuCGAcGAGCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 146860 0.7 0.462757
Target:  5'- -cGCCGCCgaucgagagggacucCGgagaaggaaGGCUGCUcCGCGCACCg -3'
miRNA:   3'- auUGGCGG---------------GCg--------UCGACGA-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 128426 0.7 0.468236
Target:  5'- cGACCGCCUcCAcGCUGCgguggggCGCGCAggguCCg -3'
miRNA:   3'- aUUGGCGGGcGU-CGACGa------GCGCGU----GG- -5'
5115 3' -60.4 NC_001798.1 + 17118 0.7 0.468236
Target:  5'- cGGCCGCCCGCgAGCgGUagUGCGCGgUg -3'
miRNA:   3'- aUUGGCGGGCG-UCGaCGa-GCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 49522 0.7 0.468236
Target:  5'- cAACCGCgacCUGCGGgagaUGCU-GCGCACCa -3'
miRNA:   3'- aUUGGCG---GGCGUCg---ACGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 24759 0.7 0.471907
Target:  5'- --cCCGCCUGCgcgccuggcugcgcgAGCUGCgguUCGUGCGCg -3'
miRNA:   3'- auuGGCGGGCG---------------UCGACG---AGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 2620 0.7 0.474669
Target:  5'- -cGCCGCCCgGCGGCgcccuggccgggGCggggcucuugcgcUUGCGCGCCu -3'
miRNA:   3'- auUGGCGGG-CGUCGa-----------CG-------------AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 52497 0.7 0.476516
Target:  5'- -cGCgCGCCggcgcagggacgaCGCGGCgGCcgCGCGCGCCg -3'
miRNA:   3'- auUG-GCGG-------------GCGUCGaCGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 32045 0.7 0.47744
Target:  5'- gGGCCGCUCGCcccGGCguccGCgggCGCcGCGCCc -3'
miRNA:   3'- aUUGGCGGGCG---UCGa---CGa--GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145548 0.7 0.486734
Target:  5'- cGGCCGCCCGCGucGC-GC-CG-GCGCCc -3'
miRNA:   3'- aUUGGCGGGCGU--CGaCGaGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 95029 0.7 0.487668
Target:  5'- aGGCCgggGCCCGCGcGCUGauggacucccucgaCGCGCACCc -3'
miRNA:   3'- aUUGG---CGGGCGU-CGACga------------GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 116723 0.69 0.496112
Target:  5'- --cCCGCCaugcucacgcUGCAGgUGCUgGCGCACa -3'
miRNA:   3'- auuGGCGG----------GCGUCgACGAgCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 25249 0.69 0.496112
Target:  5'- --cCCGaCCCGCagGGCgGCUgGCGcCGCCa -3'
miRNA:   3'- auuGGC-GGGCG--UCGaCGAgCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 119225 0.69 0.505571
Target:  5'- -cAUC-CCC-CGGCUGCUCGCGCugagcGCCc -3'
miRNA:   3'- auUGGcGGGcGUCGACGAGCGCG-----UGG- -5'
5115 3' -60.4 NC_001798.1 + 77789 0.69 0.505571
Target:  5'- -cGCCGCCUGCAgGC-GCUgGCGgGCa -3'
miRNA:   3'- auUGGCGGGCGU-CGaCGAgCGCgUGg -5'
5115 3' -60.4 NC_001798.1 + 150632 0.69 0.515106
Target:  5'- gGGCCGCgCGgGGCUGuCUCGCGgGg- -3'
miRNA:   3'- aUUGGCGgGCgUCGAC-GAGCGCgUgg -5'
5115 3' -60.4 NC_001798.1 + 2066 0.69 0.515106
Target:  5'- gGACaGCCCGCcGC-GCUCGgCGgACCa -3'
miRNA:   3'- aUUGgCGGGCGuCGaCGAGC-GCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 1190 0.69 0.515106
Target:  5'- -cGCCGCCCGCcGCgGCca--GCACCg -3'
miRNA:   3'- auUGGCGGGCGuCGaCGagcgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 78756 0.69 0.522787
Target:  5'- cGACgUGCCCGCGGUuaucugGCUagagcacgcccaGCGCACCu -3'
miRNA:   3'- aUUG-GCGGGCGUCGa-----CGAg-----------CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 108692 0.69 0.528576
Target:  5'- gGGCCGCCCGCggggacaccgaGGCauccgacgacgaaccUGagcaUCGCGCAUCu -3'
miRNA:   3'- aUUGGCGGGCG-----------UCG---------------ACg---AGCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.