miRNA display CGI


Results 81 - 100 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 98093 0.67 0.63362
Target:  5'- gAACuCGCCCGCuucaucaugGGCgcgggggGUUCGgGCGCUg -3'
miRNA:   3'- aUUG-GCGGGCG---------UCGa------CGAGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 47964 0.67 0.63362
Target:  5'- --cCCGCCCGCGGCagGCgaccCGC-CCa -3'
miRNA:   3'- auuGGCGGGCGUCGa-CGagc-GCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 75222 0.67 0.63362
Target:  5'- -cGCCGaCCuggCGCAGCUGUUCGaGguCCa -3'
miRNA:   3'- auUGGC-GG---GCGUCGACGAGCgCguGG- -5'
5115 3' -60.4 NC_001798.1 + 81538 0.67 0.63362
Target:  5'- cGGCCcaucggGCCgGCAGCUacgGCUCGCGaaacacgACCg -3'
miRNA:   3'- aUUGG------CGGgCGUCGA---CGAGCGCg------UGG- -5'
5115 3' -60.4 NC_001798.1 + 137176 0.67 0.63362
Target:  5'- cUggUCGCgguaaaCCGCGGCUGgcgaucgcugacCUgGCGCACCu -3'
miRNA:   3'- -AuuGGCG------GGCGUCGAC------------GAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 146443 0.67 0.63362
Target:  5'- gAGCCcccggaGCCCGCGGCcGCagccgaGCaGCGCCg -3'
miRNA:   3'- aUUGG------CGGGCGUCGaCGag----CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 139312 0.67 0.63362
Target:  5'- -cGCCGcCCCGCGuccgcaucGCcgGCgcccgCGCGCGCUg -3'
miRNA:   3'- auUGGC-GGGCGU--------CGa-CGa----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 36235 0.67 0.623587
Target:  5'- ---gCGCCCGCGuuucuGCcGCcCGCGCGCUc -3'
miRNA:   3'- auugGCGGGCGU-----CGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 93453 0.67 0.623587
Target:  5'- cGGCCaaCCCGCAGCUGgacCGCGaggGCCa -3'
miRNA:   3'- aUUGGc-GGGCGUCGACga-GCGCg--UGG- -5'
5115 3' -60.4 NC_001798.1 + 135529 0.67 0.623587
Target:  5'- ---aCGCCCGCcgGGCccucgagGCguccgUGCGCGCCg -3'
miRNA:   3'- auugGCGGGCG--UCGa------CGa----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 75702 0.67 0.613561
Target:  5'- gGACCuggaUCUGCAGCUGCgCGC-CGCCc -3'
miRNA:   3'- aUUGGc---GGGCGUCGACGaGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 2918 0.67 0.613561
Target:  5'- cAGCgCGUCgCGCAcgaaccGCaGCUCGCGCAgCCa -3'
miRNA:   3'- aUUG-GCGG-GCGU------CGaCGAGCGCGU-GG- -5'
5115 3' -60.4 NC_001798.1 + 52380 0.67 0.613561
Target:  5'- -cGCgGCgCGCcGcCUGCUCGC-CACCa -3'
miRNA:   3'- auUGgCGgGCGuC-GACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 97807 0.67 0.613561
Target:  5'- cAACgGCuUCGCGGC-GCgCGCGCGCUu -3'
miRNA:   3'- aUUGgCG-GGCGUCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 35329 0.67 0.613561
Target:  5'- ---gCGCCCGCaaccgcagAGCacucaGCUgGCGCGCCc -3'
miRNA:   3'- auugGCGGGCG--------UCGa----CGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 59220 0.67 0.613561
Target:  5'- --cCCGCCCGCgaccccggGGCUGUccccgcgacacaUCcCGCACCc -3'
miRNA:   3'- auuGGCGGGCG--------UCGACG------------AGcGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 118669 0.67 0.613561
Target:  5'- -cGCCGCCaGCuGGC-GCUCGCGgACg -3'
miRNA:   3'- auUGGCGGgCG-UCGaCGAGCGCgUGg -5'
5115 3' -60.4 NC_001798.1 + 97402 0.68 0.603548
Target:  5'- -cGCCGCugCUGCGGCgGCUCGUcaGCcCCg -3'
miRNA:   3'- auUGGCG--GGCGUCGaCGAGCG--CGuGG- -5'
5115 3' -60.4 NC_001798.1 + 85964 0.68 0.603548
Target:  5'- -cGCCGCCCGCaacgGGgaGUUCGagGcCGCCg -3'
miRNA:   3'- auUGGCGGGCG----UCgaCGAGCg-C-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 123856 0.68 0.603548
Target:  5'- gGACgaGCCCGUGGCccacgaGCUCGacgGCGCCu -3'
miRNA:   3'- aUUGg-CGGGCGUCGa-----CGAGCg--CGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.