miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 85306 0.67 0.66368
Target:  5'- --uCCGCCCGCGGCccGCcCGCagACCc -3'
miRNA:   3'- auuGGCGGGCGUCGa-CGaGCGcgUGG- -5'
5115 3' -60.4 NC_001798.1 + 152871 0.67 0.66368
Target:  5'- aUGGCgGCCCGUuaaaAGCUGCUaauuacCGCGagcgggaaCGCCg -3'
miRNA:   3'- -AUUGgCGGGCG----UCGACGA------GCGC--------GUGG- -5'
5115 3' -60.4 NC_001798.1 + 113447 0.67 0.66368
Target:  5'- gGAUCGCCUGCcGUUG-UCGC-CACCc -3'
miRNA:   3'- aUUGGCGGGCGuCGACgAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 118907 0.67 0.66368
Target:  5'- --cCCGCCCGUcuucgagggccaGGCgacGgaCGUGCGCCu -3'
miRNA:   3'- auuGGCGGGCG------------UCGa--CgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 130703 0.67 0.66368
Target:  5'- aGACCG-CgGCGGCgGC-CGUGCACa -3'
miRNA:   3'- aUUGGCgGgCGUCGaCGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 153363 0.67 0.66368
Target:  5'- aUGACCGCCU-CGGCcGCcgccaCGCgGCGCCg -3'
miRNA:   3'- -AUUGGCGGGcGUCGaCGa----GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 113029 0.67 0.66068
Target:  5'- -cGCCGCCaGCAcuacuuucgguuuuGCUGcCUCGCcggcuccccGCACCg -3'
miRNA:   3'- auUGGCGGgCGU--------------CGAC-GAGCG---------CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3399 0.67 0.653674
Target:  5'- ---gCGCCCcgguCAGCgccgcguuCUCGCGCGCCa -3'
miRNA:   3'- auugGCGGGc---GUCGac------GAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 26711 0.67 0.653674
Target:  5'- cUGugCGCCuuuaagacagaCGCGGCgaugGC-CGCGCGCg -3'
miRNA:   3'- -AUugGCGG-----------GCGUCGa---CGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 85395 0.67 0.653674
Target:  5'- gGACCGCCC-CuGuCUGgUCuGCcGCACCa -3'
miRNA:   3'- aUUGGCGGGcGuC-GACgAG-CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 32580 0.67 0.653674
Target:  5'- cGGCC-CCCGCGuGgaGC-CGCcGCACCc -3'
miRNA:   3'- aUUGGcGGGCGU-CgaCGaGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 54682 0.67 0.653674
Target:  5'- --nCCGCUCGCGGCUcagCGCGagGCCg -3'
miRNA:   3'- auuGGCGGGCGUCGAcgaGCGCg-UGG- -5'
5115 3' -60.4 NC_001798.1 + 80674 0.67 0.653674
Target:  5'- gGACCugguucugGCCgCGguGCUcCUCGgCGCGCCc -3'
miRNA:   3'- aUUGG--------CGG-GCguCGAcGAGC-GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 85246 0.67 0.653674
Target:  5'- --cCCGCCCccccGCGGCcGCgcggggcCGCGCGCg -3'
miRNA:   3'- auuGGCGGG----CGUCGaCGa------GCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 464 0.67 0.643651
Target:  5'- cGGCCGCcucccCCGCGGCcGCcuccccCGCGCcCCg -3'
miRNA:   3'- aUUGGCG-----GGCGUCGaCGa-----GCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 3999 0.67 0.643651
Target:  5'- gGGCCGCCCggccgugaaGCGGCccgugGCgUCGCG-GCCg -3'
miRNA:   3'- aUUGGCGGG---------CGUCGa----CG-AGCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 28255 0.67 0.643651
Target:  5'- -cGCCGCCgCGCaaggAGCgcggGC-CGCaGCGCCc -3'
miRNA:   3'- auUGGCGG-GCG----UCGa---CGaGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 103559 0.67 0.643651
Target:  5'- -cACCGCCCGgucgggcagaGGCgccuccaaccGCUCGCGCAUUu -3'
miRNA:   3'- auUGGCGGGCg---------UCGa---------CGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 146443 0.67 0.63362
Target:  5'- gAGCCcccggaGCCCGCGGCcGCagccgaGCaGCGCCg -3'
miRNA:   3'- aUUGG------CGGGCGUCGaCGag----CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 137176 0.67 0.63362
Target:  5'- cUggUCGCgguaaaCCGCGGCUGgcgaucgcugacCUgGCGCACCu -3'
miRNA:   3'- -AuuGGCG------GGCGUCGAC------------GAgCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.