Results 61 - 80 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5115 | 3' | -60.4 | NC_001798.1 | + | 26711 | 0.67 | 0.653674 |
Target: 5'- cUGugCGCCuuuaagacagaCGCGGCgaugGC-CGCGCGCg -3' miRNA: 3'- -AUugGCGG-----------GCGUCGa---CGaGCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 3399 | 0.67 | 0.653674 |
Target: 5'- ---gCGCCCcgguCAGCgccgcguuCUCGCGCGCCa -3' miRNA: 3'- auugGCGGGc---GUCGac------GAGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 103559 | 0.67 | 0.643651 |
Target: 5'- -cACCGCCCGgucgggcagaGGCgccuccaaccGCUCGCGCAUUu -3' miRNA: 3'- auUGGCGGGCg---------UCGa---------CGAGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 28255 | 0.67 | 0.643651 |
Target: 5'- -cGCCGCCgCGCaaggAGCgcggGC-CGCaGCGCCc -3' miRNA: 3'- auUGGCGG-GCG----UCGa---CGaGCG-CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 3999 | 0.67 | 0.643651 |
Target: 5'- gGGCCGCCCggccgugaaGCGGCccgugGCgUCGCG-GCCg -3' miRNA: 3'- aUUGGCGGG---------CGUCGa----CG-AGCGCgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 464 | 0.67 | 0.643651 |
Target: 5'- cGGCCGCcucccCCGCGGCcGCcuccccCGCGCcCCg -3' miRNA: 3'- aUUGGCG-----GGCGUCGaCGa-----GCGCGuGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 139312 | 0.67 | 0.63362 |
Target: 5'- -cGCCGcCCCGCGuccgcaucGCcgGCgcccgCGCGCGCUg -3' miRNA: 3'- auUGGC-GGGCGU--------CGa-CGa----GCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 146443 | 0.67 | 0.63362 |
Target: 5'- gAGCCcccggaGCCCGCGGCcGCagccgaGCaGCGCCg -3' miRNA: 3'- aUUGG------CGGGCGUCGaCGag----CG-CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 54682 | 0.67 | 0.653674 |
Target: 5'- --nCCGCUCGCGGCUcagCGCGagGCCg -3' miRNA: 3'- auuGGCGGGCGUCGAcgaGCGCg-UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 80674 | 0.67 | 0.653674 |
Target: 5'- gGACCugguucugGCCgCGguGCUcCUCGgCGCGCCc -3' miRNA: 3'- aUUGG--------CGG-GCguCGAcGAGC-GCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 130703 | 0.67 | 0.66368 |
Target: 5'- aGACCG-CgGCGGCgGC-CGUGCACa -3' miRNA: 3'- aUUGGCgGgCGUCGaCGaGCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 118907 | 0.67 | 0.66368 |
Target: 5'- --cCCGCCCGUcuucgagggccaGGCgacGgaCGUGCGCCu -3' miRNA: 3'- auuGGCGGGCG------------UCGa--CgaGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 113447 | 0.67 | 0.66368 |
Target: 5'- gGAUCGCCUGCcGUUG-UCGC-CACCc -3' miRNA: 3'- aUUGGCGGGCGuCGACgAGCGcGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 152871 | 0.67 | 0.66368 |
Target: 5'- aUGGCgGCCCGUuaaaAGCUGCUaauuacCGCGagcgggaaCGCCg -3' miRNA: 3'- -AUUGgCGGGCG----UCGACGA------GCGC--------GUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 85306 | 0.67 | 0.66368 |
Target: 5'- --uCCGCCCGCGGCccGCcCGCagACCc -3' miRNA: 3'- auuGGCGGGCGUCGa-CGaGCGcgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 74037 | 0.67 | 0.66368 |
Target: 5'- cGGCgGCgCGCGGCgGCcUGCGUugCg -3' miRNA: 3'- aUUGgCGgGCGUCGaCGaGCGCGugG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 127619 | 0.67 | 0.66368 |
Target: 5'- -uGCCGCCCGagcugaggccGCUGCUgGUGCuggucucccGCCu -3' miRNA: 3'- auUGGCGGGCgu--------CGACGAgCGCG---------UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 113029 | 0.67 | 0.66068 |
Target: 5'- -cGCCGCCaGCAcuacuuucgguuuuGCUGcCUCGCcggcuccccGCACCg -3' miRNA: 3'- auUGGCGGgCGU--------------CGAC-GAGCG---------CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 85246 | 0.67 | 0.653674 |
Target: 5'- --cCCGCCCccccGCGGCcGCgcggggcCGCGCGCg -3' miRNA: 3'- auuGGCGGG----CGUCGaCGa------GCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 137176 | 0.67 | 0.63362 |
Target: 5'- cUggUCGCgguaaaCCGCGGCUGgcgaucgcugacCUgGCGCACCu -3' miRNA: 3'- -AuuGGCG------GGCGUCGAC------------GAgCGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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