miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 32580 0.67 0.653674
Target:  5'- cGGCC-CCCGCGuGgaGC-CGCcGCACCc -3'
miRNA:   3'- aUUGGcGGGCGU-CgaCGaGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 32785 0.66 0.693519
Target:  5'- gGGCgCGCCCGCgccGGCcgGCgacgccccCGCGgGCCa -3'
miRNA:   3'- aUUG-GCGGGCG---UCGa-CGa-------GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 33646 0.66 0.683611
Target:  5'- --cCCGCCCGCAcacCUGCcCGCcaCGCCc -3'
miRNA:   3'- auuGGCGGGCGUc--GACGaGCGc-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 33753 0.66 0.683611
Target:  5'- --cCCGCCCGCAcacCUGCcCGCcaCGCCc -3'
miRNA:   3'- auuGGCGGGCGUc--GACGaGCGc-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 35202 0.66 0.722914
Target:  5'- gGGCC-CCUGCGuucguuGCUGC-CGCGCcCCc -3'
miRNA:   3'- aUUGGcGGGCGU------CGACGaGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 35329 0.67 0.613561
Target:  5'- ---gCGCCCGCaaccgcagAGCacucaGCUgGCGCGCCc -3'
miRNA:   3'- auugGCGGGCG--------UCGa----CGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 35568 0.73 0.313502
Target:  5'- cGGCCccggaGCCCGCGgcGCUGCUCG-GCugCg -3'
miRNA:   3'- aUUGG-----CGGGCGU--CGACGAGCgCGugG- -5'
5115 3' -60.4 NC_001798.1 + 35632 0.68 0.583591
Target:  5'- cGGCuCGCCC-CGuccccccucuuGCUGCUuuucCGCGCGCCu -3'
miRNA:   3'- aUUG-GCGGGcGU-----------CGACGA----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 36235 0.67 0.623587
Target:  5'- ---gCGCCCGCGuuucuGCcGCcCGCGCGCUc -3'
miRNA:   3'- auugGCGGGCGU-----CGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 37162 0.76 0.215835
Target:  5'- -cGCCGCgCCGCcuggcgGGCcGCUCgGCGCGCCa -3'
miRNA:   3'- auUGGCG-GGCG------UCGaCGAG-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 37428 0.73 0.327827
Target:  5'- cGACCaacCCCGCGuGCaaaGCUCGCGCACg -3'
miRNA:   3'- aUUGGc--GGGCGU-CGa--CGAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 38012 0.69 0.534389
Target:  5'- uUGAUgGuUCCGCAGCUGaaugggccCGUGCACCg -3'
miRNA:   3'- -AUUGgC-GGGCGUCGACga------GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 38507 0.66 0.722914
Target:  5'- --uCCGCCC-CAcCcGCcgCGCGCGCCa -3'
miRNA:   3'- auuGGCGGGcGUcGaCGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 43063 0.78 0.160771
Target:  5'- gAGCCGCCgGCcgAGCgcgccggGCUCGgGCGCCg -3'
miRNA:   3'- aUUGGCGGgCG--UCGa------CGAGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 43491 0.66 0.722914
Target:  5'- gGGCCG-CCGgGGCauacgUGCgCGCGCGCa -3'
miRNA:   3'- aUUGGCgGGCgUCG-----ACGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 43630 0.66 0.673662
Target:  5'- -cACCGCCUcccgacccagggGCgagGGCUGCUCcGUGCugGCCg -3'
miRNA:   3'- auUGGCGGG------------CG---UCGACGAG-CGCG--UGG- -5'
5115 3' -60.4 NC_001798.1 + 46972 0.67 0.63362
Target:  5'- gGGCCGCUgggUGguGCUGUuguUCGuCGCGCUc -3'
miRNA:   3'- aUUGGCGG---GCguCGACG---AGC-GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 47666 0.69 0.534389
Target:  5'- --uCCG-CCGCGGCgcuggcccgaUGCgCGCGCGCCc -3'
miRNA:   3'- auuGGCgGGCGUCG----------ACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 47872 0.66 0.722914
Target:  5'- gUGGgCGCCgGCgGGC-GCUCGCaCGCCc -3'
miRNA:   3'- -AUUgGCGGgCG-UCGaCGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 47964 0.67 0.63362
Target:  5'- --cCCGCCCGCGGCagGCgaccCGC-CCa -3'
miRNA:   3'- auuGGCGGGCGUCGa-CGagc-GCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.