miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 24855 0.72 0.350211
Target:  5'- aGGCCG-CCGUGGCcGCcgUGCGCGCCg -3'
miRNA:   3'- aUUGGCgGGCGUCGaCGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25005 0.72 0.34263
Target:  5'- -cACCGUcgCCGCGGCcgacucGCUCGCcGCGCCc -3'
miRNA:   3'- auUGGCG--GGCGUCGa-----CGAGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25151 0.69 0.544126
Target:  5'- cGGCCGCCCcucccGCGGggGC-CGCGCcCCc -3'
miRNA:   3'- aUUGGCGGG-----CGUCgaCGaGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 25193 0.72 0.34263
Target:  5'- -cGCCGCCgcCGCGGCcGC-CGCGCcCCg -3'
miRNA:   3'- auUGGCGG--GCGUCGaCGaGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 25249 0.69 0.496112
Target:  5'- --cCCGaCCCGCagGGCgGCUgGCGcCGCCa -3'
miRNA:   3'- auuGGC-GGGCG--UCGaCGAgCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 25470 0.71 0.432368
Target:  5'- -cGCCGCCUuCGGCccGCU-GCGCGCCu -3'
miRNA:   3'- auUGGCGGGcGUCGa-CGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25803 0.66 0.672665
Target:  5'- -cGCCGuggaguuCCUGgGGCUGCUgGCcgGCGCCu -3'
miRNA:   3'- auUGGC-------GGGCgUCGACGAgCG--CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25937 0.7 0.450105
Target:  5'- -uGCUGCCCGcCGGCagUGCgcCGUGCGCUg -3'
miRNA:   3'- auUGGCGGGC-GUCG--ACGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 26345 0.68 0.563767
Target:  5'- -cGCCGUgCGCGGCggcccgGCggagcugCGCGgGCCg -3'
miRNA:   3'- auUGGCGgGCGUCGa-----CGa------GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 26551 0.68 0.593556
Target:  5'- gGACCGCCgCGgGGCUGgCcaCGC-CGCCg -3'
miRNA:   3'- aUUGGCGG-GCgUCGAC-Ga-GCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 26711 0.67 0.653674
Target:  5'- cUGugCGCCuuuaagacagaCGCGGCgaugGC-CGCGCGCg -3'
miRNA:   3'- -AUugGCGG-----------GCGUCGa---CGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 27634 0.69 0.544126
Target:  5'- --cCCGCCCGCcGCcGC-CGCcCGCCu -3'
miRNA:   3'- auuGGCGGGCGuCGaCGaGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 27898 0.66 0.693519
Target:  5'- cAGCCGCCCGCca-UGUccCGC-CGCCg -3'
miRNA:   3'- aUUGGCGGGCGucgACGa-GCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 28255 0.67 0.643651
Target:  5'- -cGCCGCCgCGCaaggAGCgcggGC-CGCaGCGCCc -3'
miRNA:   3'- auUGGCGG-GCG----UCGa---CGaGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 28376 0.68 0.583591
Target:  5'- --cCCGCCCGCGGacgcGC-CGCGCGg- -3'
miRNA:   3'- auuGGCGGGCGUCga--CGaGCGCGUgg -5'
5115 3' -60.4 NC_001798.1 + 28547 0.72 0.34263
Target:  5'- --cCCGCCCGCAGgUGUgcuucUCGcCGCGCg -3'
miRNA:   3'- auuGGCGGGCGUCgACG-----AGC-GCGUGg -5'
5115 3' -60.4 NC_001798.1 + 28978 0.72 0.381711
Target:  5'- --uCCGCCCGCcccagggggcGGCgccgGCcaacCGCGCGCCg -3'
miRNA:   3'- auuGGCGGGCG----------UCGa---CGa---GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 31678 0.78 0.141809
Target:  5'- -cGCCGCCCGCcguGCcggUGgaCGCGCACCg -3'
miRNA:   3'- auUGGCGGGCGu--CG---ACgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 32045 0.7 0.47744
Target:  5'- gGGCCGCUCGCcccGGCguccGCgggCGCcGCGCCc -3'
miRNA:   3'- aUUGGCGGGCG---UCGa---CGa--GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 32302 0.68 0.582596
Target:  5'- cGGCC-CCCGC-GCUGCU-GCGCcgcggggGCCg -3'
miRNA:   3'- aUUGGcGGGCGuCGACGAgCGCG-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.