miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 134373 0.7 0.459123
Target:  5'- --cCCGCCgGCcGCUcCUCGCGcCGCCc -3'
miRNA:   3'- auuGGCGGgCGuCGAcGAGCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 133752 0.8 0.118391
Target:  5'- -cGCgCGCCCGCGugggggcGCUGCUUGCGCACg -3'
miRNA:   3'- auUG-GCGGGCGU-------CGACGAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 133673 0.66 0.672665
Target:  5'- ---gCGCCUGCcggacgcacagacAGCUGUaCGCGCugCu -3'
miRNA:   3'- auugGCGGGCG-------------UCGACGaGCGCGugG- -5'
5115 3' -60.4 NC_001798.1 + 133468 0.68 0.603548
Target:  5'- gUGGCCgacGCCCugaGCGGCUGCccccCGCGCGgguCCg -3'
miRNA:   3'- -AUUGG---CGGG---CGUCGACGa---GCGCGU---GG- -5'
5115 3' -60.4 NC_001798.1 + 132687 0.66 0.721944
Target:  5'- -cGCaCGCCgaCGCGGCgcagGCgcgggggUCGCGCAUCu -3'
miRNA:   3'- auUG-GCGG--GCGUCGa---CG-------AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 132307 0.71 0.423653
Target:  5'- gGACCGCgUGCuGCUGCuccacUCGCuCACCc -3'
miRNA:   3'- aUUGGCGgGCGuCGACG-----AGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 131563 0.75 0.254932
Target:  5'- cGACgGCCCGguGCguaacugugGUcCGCGCGCCa -3'
miRNA:   3'- aUUGgCGGGCguCGa--------CGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 130703 0.67 0.66368
Target:  5'- aGACCG-CgGCGGCgGC-CGUGCACa -3'
miRNA:   3'- aUUGGCgGgCGUCGaCGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 128426 0.7 0.468236
Target:  5'- cGACCGCCUcCAcGCUGCgguggggCGCGCAggguCCg -3'
miRNA:   3'- aUUGGCGGGcGU-CGACGa------GCGCGU----GG- -5'
5115 3' -60.4 NC_001798.1 + 127619 0.67 0.66368
Target:  5'- -uGCCGCCCGagcugaggccGCUGCUgGUGCuggucucccGCCu -3'
miRNA:   3'- auUGGCGGGCgu--------CGACGAgCGCG---------UGG- -5'
5115 3' -60.4 NC_001798.1 + 125745 0.66 0.68063
Target:  5'- -cGCCGCCaCGCGGCccUGCgcCGacguuuggccgagaCGCACCu -3'
miRNA:   3'- auUGGCGG-GCGUCG--ACGa-GC--------------GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 125303 0.75 0.237506
Target:  5'- -cACCGCCCGCAcCaGCUCGgGgGCCa -3'
miRNA:   3'- auUGGCGGGCGUcGaCGAGCgCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 124405 0.74 0.272761
Target:  5'- cAGCCGCCUGUuugcaacgAGCUGCcccgcggUCGCGCggGCCg -3'
miRNA:   3'- aUUGGCGGGCG--------UCGACG-------AGCGCG--UGG- -5'
5115 3' -60.4 NC_001798.1 + 124118 0.66 0.673662
Target:  5'- --uCCGCCaaCGC-GCUGUg-GCGCGCCc -3'
miRNA:   3'- auuGGCGG--GCGuCGACGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 123856 0.68 0.603548
Target:  5'- gGACgaGCCCGUGGCccacgaGCUCGacgGCGCCu -3'
miRNA:   3'- aUUGg-CGGGCGUCGa-----CGAGCg--CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121616 0.66 0.693519
Target:  5'- --cCCGCCaaacacgcgauaCGCGGCcGacggCGCGCGCCu -3'
miRNA:   3'- auuGGCGG------------GCGUCGaCga--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121139 0.66 0.673662
Target:  5'- -cACCGCCgGCcgGGCcaUGaaCGCGCACUu -3'
miRNA:   3'- auUGGCGGgCG--UCG--ACgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121065 0.68 0.563767
Target:  5'- cGugCGCCCGCgGGCcccgaGgaCGCGCACa -3'
miRNA:   3'- aUugGCGGGCG-UCGa----CgaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 120319 0.71 0.432368
Target:  5'- cGACCGCCaCGCGaacGCUGCgaaaCGCcccggggugcaGCGCCa -3'
miRNA:   3'- aUUGGCGG-GCGU---CGACGa---GCG-----------CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 120188 0.66 0.681624
Target:  5'- gGGCgGCUCGCAGUgauagaagaggaGCUCGgGCcCCg -3'
miRNA:   3'- aUUGgCGGGCGUCGa-----------CGAGCgCGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.