miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 146443 0.67 0.63362
Target:  5'- gAGCCcccggaGCCCGCGGCcGCagccgaGCaGCGCCg -3'
miRNA:   3'- aUUGG------CGGGCGUCGaCGag----CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145548 0.7 0.486734
Target:  5'- cGGCCGCCCGCGucGC-GC-CG-GCGCCc -3'
miRNA:   3'- aUUGGCGGGCGU--CGaCGaGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145506 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145464 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145422 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 143018 1.09 0.000958
Target:  5'- aUAACCGCCCGCAGCUGCUCGCGCACCu -3'
miRNA:   3'- -AUUGGCGGGCGUCGACGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 142981 0.68 0.573659
Target:  5'- gGACCGCgUGUAauacuuGCgcgGCUUGCGCgACCg -3'
miRNA:   3'- aUUGGCGgGCGU------CGa--CGAGCGCG-UGG- -5'
5115 3' -60.4 NC_001798.1 + 142693 0.66 0.683611
Target:  5'- --cCCGCCCGCuuGCauauuccCUUGCGCGCg -3'
miRNA:   3'- auuGGCGGGCGu-CGac-----GAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 140191 0.76 0.215835
Target:  5'- gGGCCGCCUGCGGCcggUGCUgGUGUGCg -3'
miRNA:   3'- aUUGGCGGGCGUCG---ACGAgCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 139312 0.67 0.63362
Target:  5'- -cGCCGcCCCGCGuccgcaucGCcgGCgcccgCGCGCGCUg -3'
miRNA:   3'- auUGGC-GGGCGU--------CGa-CGa----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 139145 0.76 0.19588
Target:  5'- -cGCCGCCUGCAGCUGUcggguggcggccUCGCuGgACCg -3'
miRNA:   3'- auUGGCGGGCGUCGACG------------AGCG-CgUGG- -5'
5115 3' -60.4 NC_001798.1 + 139049 0.68 0.583591
Target:  5'- cAGCCG-CUGCGGCUggagGC-CGCGgGCCa -3'
miRNA:   3'- aUUGGCgGGCGUCGA----CGaGCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 138610 0.76 0.19588
Target:  5'- -cGCUGCCCGCuGaccgGgUCGCGCACCa -3'
miRNA:   3'- auUGGCGGGCGuCga--CgAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 138122 0.66 0.707306
Target:  5'- cGGCCGUCUgaaacgccuggcgaaGCuGCUGCggUCGCGCcCCc -3'
miRNA:   3'- aUUGGCGGG---------------CGuCGACG--AGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 137988 0.79 0.131436
Target:  5'- cUGGgCGCgCCGCAGCUcGCggUCGCGCGCCu -3'
miRNA:   3'- -AUUgGCG-GGCGUCGA-CG--AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 137942 0.72 0.373661
Target:  5'- cGGCCGCCCgguccgccGCGcGCUGCUCcCGCuCCa -3'
miRNA:   3'- aUUGGCGGG--------CGU-CGACGAGcGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 137176 0.67 0.63362
Target:  5'- cUggUCGCgguaaaCCGCGGCUGgcgaucgcugacCUgGCGCACCu -3'
miRNA:   3'- -AuuGGCG------GGCGUCGAC------------GAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 135529 0.67 0.623587
Target:  5'- ---aCGCCCGCcgGGCccucgagGCguccgUGCGCGCCg -3'
miRNA:   3'- auugGCGGGCG--UCGa------CGa----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 135353 0.68 0.563767
Target:  5'- -cGCCuGCCCcgcgcuccgGCAGCUGCUCgGCGgggucauggcCGCCg -3'
miRNA:   3'- auUGG-CGGG---------CGUCGACGAG-CGC----------GUGG- -5'
5115 3' -60.4 NC_001798.1 + 134944 0.66 0.703378
Target:  5'- gUGACCuggugcgggGCgCCGCGGCcacccaUGC-CGCGUGCCu -3'
miRNA:   3'- -AUUGG---------CG-GGCGUCG------ACGaGCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.