miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 131563 0.75 0.254932
Target:  5'- cGACgGCCCGguGCguaacugugGUcCGCGCGCCa -3'
miRNA:   3'- aUUGgCGGGCguCGa--------CGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 4712 0.74 0.26097
Target:  5'- -cGCCGUCCGCGGCagGCUCGuCGacgGCCu -3'
miRNA:   3'- auUGGCGGGCGUCGa-CGAGC-GCg--UGG- -5'
5115 3' -60.4 NC_001798.1 + 153695 0.74 0.267123
Target:  5'- gGGCCGCCgC-CGGCgcagGCUCagGCGCGCCa -3'
miRNA:   3'- aUUGGCGG-GcGUCGa---CGAG--CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 68996 0.74 0.267123
Target:  5'- gGACCGCCU-CGGCgGCgUCGCGCGCa -3'
miRNA:   3'- aUUGGCGGGcGUCGaCG-AGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 124405 0.74 0.272761
Target:  5'- cAGCCGCCUGUuugcaacgAGCUGCcccgcggUCGCGCggGCCg -3'
miRNA:   3'- aUUGGCGGGCG--------UCGACG-------AGCGCG--UGG- -5'
5115 3' -60.4 NC_001798.1 + 97870 0.74 0.279781
Target:  5'- cAACCGCgCCGCcccgGGCgUGUUugaCGCGCACCg -3'
miRNA:   3'- aUUGGCG-GGCG----UCG-ACGA---GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 70422 0.74 0.286287
Target:  5'- gAACCucCCCG-GGCUGCUgGUGCACCg -3'
miRNA:   3'- aUUGGc-GGGCgUCGACGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 54659 0.74 0.292912
Target:  5'- cAGCgGCCgGCAGCcGCg-GCGCGCCc -3'
miRNA:   3'- aUUGgCGGgCGUCGaCGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 9553 0.74 0.292912
Target:  5'- uUAACCGCCCGcCAGgaGCgCcUGCGCCa -3'
miRNA:   3'- -AUUGGCGGGC-GUCgaCGaGcGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 9642 0.73 0.299656
Target:  5'- -cACCGCCCcgaggcGCAGCggGC-CGCGCGCg -3'
miRNA:   3'- auUGGCGGG------CGUCGa-CGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 145506 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145422 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 145464 0.73 0.306519
Target:  5'- cGGCCGCCgCGCgcccccgcccGGCcGC-CGCGCGCCc -3'
miRNA:   3'- aUUGGCGG-GCG----------UCGaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 109366 0.73 0.306519
Target:  5'- cUGGCCGCCCggggaGCAGCggGCU-GCGCgGCCg -3'
miRNA:   3'- -AUUGGCGGG-----CGUCGa-CGAgCGCG-UGG- -5'
5115 3' -60.4 NC_001798.1 + 114532 0.73 0.313502
Target:  5'- cAGCUGCgCGCcauccAGCaGCUCGCGCGCa -3'
miRNA:   3'- aUUGGCGgGCG-----UCGaCGAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 35568 0.73 0.313502
Target:  5'- cGGCCccggaGCCCGCGgcGCUGCUCG-GCugCg -3'
miRNA:   3'- aUUGG-----CGGGCGU--CGACGAGCgCGugG- -5'
5115 3' -60.4 NC_001798.1 + 71081 0.73 0.320604
Target:  5'- aAGCCgcgucaGCCCGCGGUcgGCgUGCGCGCCc -3'
miRNA:   3'- aUUGG------CGGGCGUCGa-CGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 150814 0.73 0.327827
Target:  5'- -cGCCGCCgcUGCuGCUGCUCcGCgggGCGCCa -3'
miRNA:   3'- auUGGCGG--GCGuCGACGAG-CG---CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 75259 0.73 0.327827
Target:  5'- gUGGCCGCCacgGCGGUccgGCUCGCgGCGCg -3'
miRNA:   3'- -AUUGGCGGg--CGUCGa--CGAGCG-CGUGg -5'
5115 3' -60.4 NC_001798.1 + 37428 0.73 0.327827
Target:  5'- cGACCaacCCCGCGuGCaaaGCUCGCGCACg -3'
miRNA:   3'- aUUGGc--GGGCGU-CGa--CGAGCGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.