miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 4069 0.66 0.683611
Target:  5'- aGGCgGCCCGCGGUcGC-CGCGgGgguCCg -3'
miRNA:   3'- aUUGgCGGGCGUCGaCGaGCGCgU---GG- -5'
5115 3' -60.4 NC_001798.1 + 4194 0.72 0.35791
Target:  5'- --cCCGCCCGCGGCgUGgUCuGCgGCGCUg -3'
miRNA:   3'- auuGGCGGGCGUCG-ACgAG-CG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 4600 0.66 0.703378
Target:  5'- gAGCgGgCCGCuuCUuCUUGCGCGCCg -3'
miRNA:   3'- aUUGgCgGGCGucGAcGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 4712 0.74 0.26097
Target:  5'- -cGCCGUCCGCGGCagGCUCGuCGacgGCCu -3'
miRNA:   3'- auUGGCGGGCGUCGa-CGAGC-GCg--UGG- -5'
5115 3' -60.4 NC_001798.1 + 7892 0.68 0.560808
Target:  5'- cGGCCGCcaugaauuuuaucgCCGCGGCUGCgcccUGCGU-CCa -3'
miRNA:   3'- aUUGGCG--------------GGCGUCGACGa---GCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 9123 0.68 0.593556
Target:  5'- gAGCCGCCgcgagguggucUGCGGCacGCgggCGCgGCGCCg -3'
miRNA:   3'- aUUGGCGG-----------GCGUCGa-CGa--GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 9553 0.74 0.292912
Target:  5'- uUAACCGCCCGcCAGgaGCgCcUGCGCCa -3'
miRNA:   3'- -AUUGGCGGGC-GUCgaCGaGcGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 9642 0.73 0.299656
Target:  5'- -cACCGCCCcgaggcGCAGCggGC-CGCGCGCg -3'
miRNA:   3'- auUGGCGGG------CGUCGa-CGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 11938 0.69 0.544126
Target:  5'- --cCCGCagaaGCGGCUGC-CGCGCcagACCc -3'
miRNA:   3'- auuGGCGgg--CGUCGACGaGCGCG---UGG- -5'
5115 3' -60.4 NC_001798.1 + 14084 0.71 0.389876
Target:  5'- cGACCGCuCCaUAGCUGCUguacccCGgGCACCc -3'
miRNA:   3'- aUUGGCG-GGcGUCGACGA------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 17118 0.7 0.468236
Target:  5'- cGGCCGCCCGCgAGCgGUagUGCGCGgUg -3'
miRNA:   3'- aUUGGCGGGCG-UCGaCGa-GCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 17707 0.72 0.381711
Target:  5'- cAGCCGCgccUCGUGGCucgUGCUgGCGUACCa -3'
miRNA:   3'- aUUGGCG---GGCGUCG---ACGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 18185 0.69 0.544126
Target:  5'- aGAUCuCCUGCAGCUGacacaggCGCGCAgCCu -3'
miRNA:   3'- aUUGGcGGGCGUCGACga-----GCGCGU-GG- -5'
5115 3' -60.4 NC_001798.1 + 22099 0.66 0.683611
Target:  5'- gAGCCGCCCGCggaccaacggGGCgacCUCGCcgGCcCCu -3'
miRNA:   3'- aUUGGCGGGCG----------UCGac-GAGCG--CGuGG- -5'
5115 3' -60.4 NC_001798.1 + 22259 0.68 0.553921
Target:  5'- aAGCCGCCCGCgccgGGCgcuaaugagaUGC-CGCGCGg- -3'
miRNA:   3'- aUUGGCGGGCG----UCG----------ACGaGCGCGUgg -5'
5115 3' -60.4 NC_001798.1 + 23648 0.71 0.432368
Target:  5'- gGGCCGCCUGgAGCgccgccggGCcCGCGCGgCg -3'
miRNA:   3'- aUUGGCGGGCgUCGa-------CGaGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 24235 0.68 0.593556
Target:  5'- cGACCGCgCGCAGaagggcuucCUGCUgaccagccugCGCcGCGCCu -3'
miRNA:   3'- aUUGGCGgGCGUC---------GACGA----------GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 24408 0.66 0.713179
Target:  5'- -uGCCGUCgGCGGCgGCgUCGCcgGCCg -3'
miRNA:   3'- auUGGCGGgCGUCGaCG-AGCGcgUGG- -5'
5115 3' -60.4 NC_001798.1 + 24458 0.66 0.713179
Target:  5'- -uACgGCgCCGCGGgggUGCUCGC-CGCCc -3'
miRNA:   3'- auUGgCG-GGCGUCg--ACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 24759 0.7 0.471907
Target:  5'- --cCCGCCUGCgcgccuggcugcgcgAGCUGCgguUCGUGCGCg -3'
miRNA:   3'- auuGGCGGGCG---------------UCGACG---AGCGCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.