miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 116395 0.66 0.707306
Target:  5'- cGACgGCCgGCuGCUGCacaacacccaggccCGCGCgGCCg -3'
miRNA:   3'- aUUGgCGGgCGuCGACGa-------------GCGCG-UGG- -5'
5115 3' -60.4 NC_001798.1 + 83848 0.66 0.722914
Target:  5'- --cCCGUCCggGCGGC-GCUgGCGgGCCc -3'
miRNA:   3'- auuGGCGGG--CGUCGaCGAgCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 86262 0.66 0.722914
Target:  5'- -cACgGCCgGgGGC-GCggGCGCACCg -3'
miRNA:   3'- auUGgCGGgCgUCGaCGagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 47872 0.66 0.722914
Target:  5'- gUGGgCGCCgGCgGGC-GCUCGCaCGCCc -3'
miRNA:   3'- -AUUgGCGGgCG-UCGaCGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 43491 0.66 0.722914
Target:  5'- gGGCCG-CCGgGGCauacgUGCgCGCGCGCa -3'
miRNA:   3'- aUUGGCgGGCgUCG-----ACGaGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 38507 0.66 0.722914
Target:  5'- --uCCGCCC-CAcCcGCcgCGCGCGCCa -3'
miRNA:   3'- auuGGCGGGcGUcGaCGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 149482 0.66 0.722914
Target:  5'- -cGCgGCCCGCAGCagGUcCGC-CACg -3'
miRNA:   3'- auUGgCGGGCGUCGa-CGaGCGcGUGg -5'
5115 3' -60.4 NC_001798.1 + 132687 0.66 0.721944
Target:  5'- -cGCaCGCCgaCGCGGCgcagGCgcgggggUCGCGCAUCu -3'
miRNA:   3'- auUG-GCGG--GCGUCGa---CG-------AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 94714 0.66 0.720002
Target:  5'- cAGCCGaaCCCGCAGUgGUUCuggaccgcccuccaGCGCaACCa -3'
miRNA:   3'- aUUGGC--GGGCGUCGaCGAG--------------CGCG-UGG- -5'
5115 3' -60.4 NC_001798.1 + 53303 0.66 0.713179
Target:  5'- -cGCCGaUCGCAGCguccgGCUggcggCGCGgCACCa -3'
miRNA:   3'- auUGGCgGGCGUCGa----CGA-----GCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 154018 0.66 0.713179
Target:  5'- gGACCauuugggaGUCUGCGGUUGggaGCGCGCCg -3'
miRNA:   3'- aUUGG--------CGGGCGUCGACgagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153860 0.66 0.713179
Target:  5'- --cCCGCCCucgcucggGgGGCUGUUCGCcCACUc -3'
miRNA:   3'- auuGGCGGG--------CgUCGACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 95110 0.66 0.713179
Target:  5'- -uGCgGCCCGUgaugGC-CGCGCGCCc -3'
miRNA:   3'- auUGgCGGGCGucgaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 80304 0.66 0.713179
Target:  5'- aAACCGaCCCGCuGGCgccCUgGCGCucgGCCu -3'
miRNA:   3'- aUUGGC-GGGCG-UCGac-GAgCGCG---UGG- -5'
5115 3' -60.4 NC_001798.1 + 24408 0.66 0.713179
Target:  5'- -uGCCGUCgGCGGCgGCgUCGCcgGCCg -3'
miRNA:   3'- auUGGCGGgCGUCGaCG-AGCGcgUGG- -5'
5115 3' -60.4 NC_001798.1 + 149422 0.66 0.713179
Target:  5'- gGGCC-UCaCGCAGUUGCgCGCGUGCUc -3'
miRNA:   3'- aUUGGcGG-GCGUCGACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 24458 0.66 0.713179
Target:  5'- -uACgGCgCCGCGGgggUGCUCGC-CGCCc -3'
miRNA:   3'- auUGgCG-GGCGUCg--ACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 79807 0.66 0.712202
Target:  5'- aGGCCGCCaacuuuCAGCUGUUCGgucgcuuCGuCGCCa -3'
miRNA:   3'- aUUGGCGGgc----GUCGACGAGC-------GC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 138122 0.66 0.707306
Target:  5'- cGGCCGUCUgaaacgccuggcgaaGCuGCUGCggUCGCGCcCCc -3'
miRNA:   3'- aUUGGCGGG---------------CGuCGACG--AGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 134944 0.66 0.703378
Target:  5'- gUGACCuggugcgggGCgCCGCGGCcacccaUGC-CGCGUGCCu -3'
miRNA:   3'- -AUUGG---------CG-GGCGUCG------ACGaGCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.