miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 172 0.66 0.673662
Target:  5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3'
miRNA:   3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 411 0.68 0.583591
Target:  5'- -cGCCgaGCUCGCGGCaGCcccuccccccCGCGCGCCa -3'
miRNA:   3'- auUGG--CGGGCGUCGaCGa---------GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 464 0.67 0.643651
Target:  5'- cGGCCGCcucccCCGCGGCcGCcuccccCGCGCcCCg -3'
miRNA:   3'- aUUGGCG-----GGCGUCGaCGa-----GCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 530 0.72 0.365727
Target:  5'- ---gCGCCCGCGGCcccgaGCUCGCaGCAgCCc -3'
miRNA:   3'- auugGCGGGCGUCGa----CGAGCG-CGU-GG- -5'
5115 3' -60.4 NC_001798.1 + 1190 0.69 0.515106
Target:  5'- -cGCCGCCCGCcGCgGCca--GCACCg -3'
miRNA:   3'- auUGGCGGGCGuCGaCGagcgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 1220 0.66 0.673662
Target:  5'- -cGCgGCCCGCGGCcgacGCccaGCGUAUCu -3'
miRNA:   3'- auUGgCGGGCGUCGa---CGag-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 1363 0.7 0.450105
Target:  5'- gGGCCGCCgCGCA-CgGCgUCGCGCcCCa -3'
miRNA:   3'- aUUGGCGG-GCGUcGaCG-AGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 1400 0.68 0.564754
Target:  5'- aGACgGgCCGCAGCgGCgcgcccaggccccagCGCGCGCa -3'
miRNA:   3'- aUUGgCgGGCGUCGaCGa--------------GCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 1749 0.66 0.673662
Target:  5'- -cGCCGCCgGcCAGC-GCacgGCGCACUg -3'
miRNA:   3'- auUGGCGGgC-GUCGaCGag-CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 2066 0.69 0.515106
Target:  5'- gGACaGCCCGCcGC-GCUCGgCGgACCa -3'
miRNA:   3'- aUUGgCGGGCGuCGaCGAGC-GCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 2203 0.73 0.335169
Target:  5'- aGGCCGCCgCGCGGCgcaGCgggcccgaggCGCGCAgCg -3'
miRNA:   3'- aUUGGCGG-GCGUCGa--CGa---------GCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 2429 0.67 0.63362
Target:  5'- gUGGCUggGCCC-CGGCgGCUgGCgGCGCCa -3'
miRNA:   3'- -AUUGG--CGGGcGUCGaCGAgCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 2620 0.7 0.474669
Target:  5'- -cGCCGCCCgGCGGCgcccuggccgggGCggggcucuugcgcUUGCGCGCCu -3'
miRNA:   3'- auUGGCGGG-CGUCGa-----------CG-------------AGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 2918 0.67 0.613561
Target:  5'- cAGCgCGUCgCGCAcgaaccGCaGCUCGCGCAgCCa -3'
miRNA:   3'- aUUG-GCGG-GCGU------CGaCGAGCGCGU-GG- -5'
5115 3' -60.4 NC_001798.1 + 3121 0.71 0.415045
Target:  5'- -cACgGCCaCGCGGCccGCcucCGCGCGCCg -3'
miRNA:   3'- auUGgCGG-GCGUCGa-CGa--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3250 0.68 0.563767
Target:  5'- -cACC-CCCGCGGCgccguaGCcggCGgGCACCg -3'
miRNA:   3'- auUGGcGGGCGUCGa-----CGa--GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3399 0.67 0.653674
Target:  5'- ---gCGCCCcgguCAGCgccgcguuCUCGCGCGCCa -3'
miRNA:   3'- auugGCGGGc---GUCGac------GAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3579 0.7 0.453701
Target:  5'- cGGCCcgcGCCaCGCugccggagaugaaggAGCUGCUguUGCGCGCCg -3'
miRNA:   3'- aUUGG---CGG-GCG---------------UCGACGA--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3749 0.69 0.534389
Target:  5'- -uGCUGCgCCGCGucGCccaGCUCGgGCGCCc -3'
miRNA:   3'- auUGGCG-GGCGU--CGa--CGAGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3999 0.67 0.643651
Target:  5'- gGGCCGCCCggccgugaaGCGGCccgugGCgUCGCG-GCCg -3'
miRNA:   3'- aUUGGCGGG---------CGUCGa----CG-AGCGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.