miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 154510 0.66 0.673662
Target:  5'- -cGCgCGCCgCGgGGCUGCcuucccgCGgGCGCCc -3'
miRNA:   3'- auUG-GCGG-GCgUCGACGa------GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 154018 0.66 0.713179
Target:  5'- gGACCauuugggaGUCUGCGGUUGggaGCGCGCCg -3'
miRNA:   3'- aUUGG--------CGGGCGUCGACgagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153860 0.66 0.713179
Target:  5'- --cCCGCCCucgcucggGgGGCUGUUCGCcCACUc -3'
miRNA:   3'- auuGGCGGG--------CgUCGACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153780 0.68 0.573659
Target:  5'- -uGCgGCCCGC-GCUcCUUGCGCGgCg -3'
miRNA:   3'- auUGgCGGGCGuCGAcGAGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 153695 0.74 0.267123
Target:  5'- gGGCCGCCgC-CGGCgcagGCUCagGCGCGCCa -3'
miRNA:   3'- aUUGGCGG-GcGUCGa---CGAG--CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153395 0.78 0.156804
Target:  5'- gAACCGgUCGCGGUcggcccGCUCGCGCGCCc -3'
miRNA:   3'- aUUGGCgGGCGUCGa-----CGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153363 0.67 0.66368
Target:  5'- aUGACCGCCU-CGGCcGCcgccaCGCgGCGCCg -3'
miRNA:   3'- -AUUGGCGGGcGUCGaCGa----GCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153228 0.78 0.152926
Target:  5'- cGGCCcggGCCCGCGGCgGCggaggaccCGCGCGCCg -3'
miRNA:   3'- aUUGG---CGGGCGUCGaCGa-------GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 152871 0.67 0.66368
Target:  5'- aUGGCgGCCCGUuaaaAGCUGCUaauuacCGCGagcgggaaCGCCg -3'
miRNA:   3'- -AUUGgCGGGCG----UCGACGA------GCGC--------GUGG- -5'
5115 3' -60.4 NC_001798.1 + 152384 0.66 0.683611
Target:  5'- gGGCCG-CCGCuccGUcGCUCGCaGUGCCg -3'
miRNA:   3'- aUUGGCgGGCGu--CGaCGAGCG-CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 152239 0.69 0.538277
Target:  5'- cGGCCGCUCGgggccgggguccgccCGGgaGCUCGUGCcggGCCg -3'
miRNA:   3'- aUUGGCGGGC---------------GUCgaCGAGCGCG---UGG- -5'
5115 3' -60.4 NC_001798.1 + 150814 0.73 0.327827
Target:  5'- -cGCCGCCgcUGCuGCUGCUCcGCgggGCGCCa -3'
miRNA:   3'- auUGGCGG--GCGuCGACGAG-CG---CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 150672 0.69 0.534389
Target:  5'- -cGCCG-CCGCGGCgucuucGCccaccCGCGCGCCu -3'
miRNA:   3'- auUGGCgGGCGUCGa-----CGa----GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 150632 0.69 0.515106
Target:  5'- gGGCCGCgCGgGGCUGuCUCGCGgGg- -3'
miRNA:   3'- aUUGGCGgGCgUCGAC-GAGCGCgUgg -5'
5115 3' -60.4 NC_001798.1 + 150461 0.69 0.544126
Target:  5'- cGACgGCCgCGCGGggGCgcgCGgCGCGCCc -3'
miRNA:   3'- aUUGgCGG-GCGUCgaCGa--GC-GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 149730 0.66 0.683611
Target:  5'- cGGCC-CCCGCGGCgcaGCa-GCGCggggGCCg -3'
miRNA:   3'- aUUGGcGGGCGUCGa--CGagCGCG----UGG- -5'
5115 3' -60.4 NC_001798.1 + 149482 0.66 0.722914
Target:  5'- -cGCgGCCCGCAGCagGUcCGC-CACg -3'
miRNA:   3'- auUGgCGGGCGUCGa-CGaGCGcGUGg -5'
5115 3' -60.4 NC_001798.1 + 149422 0.66 0.713179
Target:  5'- gGGCC-UCaCGCAGUUGCgCGCGUGCUc -3'
miRNA:   3'- aUUGGcGG-GCGUCGACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 146860 0.7 0.462757
Target:  5'- -cGCCGCCgaucgagagggacucCGgagaaggaaGGCUGCUcCGCGCACCg -3'
miRNA:   3'- auUGGCGG---------------GCg--------UCGACGA-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 146773 0.68 0.583591
Target:  5'- --cCCGCCCGCGuGUUGCUgUGgGCAUUu -3'
miRNA:   3'- auuGGCGGGCGU-CGACGA-GCgCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.