Results 1 - 20 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5115 | 3' | -60.4 | NC_001798.1 | + | 143018 | 1.09 | 0.000958 |
Target: 5'- aUAACCGCCCGCAGCUGCUCGCGCACCu -3' miRNA: 3'- -AUUGGCGGGCGUCGACGAGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 98786 | 0.81 | 0.099127 |
Target: 5'- -cGCCGCCgGCcacgccAGCUGCgCGCGCACCu -3' miRNA: 3'- auUGGCGGgCG------UCGACGaGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 133752 | 0.8 | 0.118391 |
Target: 5'- -cGCgCGCCCGCGugggggcGCUGCUUGCGCACg -3' miRNA: 3'- auUG-GCGGGCGU-------CGACGAGCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 137988 | 0.79 | 0.131436 |
Target: 5'- cUGGgCGCgCCGCAGCUcGCggUCGCGCGCCu -3' miRNA: 3'- -AUUgGCG-GGCGUCGA-CG--AGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 31678 | 0.78 | 0.141809 |
Target: 5'- -cGCCGCCCGCcguGCcggUGgaCGCGCACCg -3' miRNA: 3'- auUGGCGGGCGu--CG---ACgaGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 153228 | 0.78 | 0.152926 |
Target: 5'- cGGCCcggGCCCGCGGCgGCggaggaccCGCGCGCCg -3' miRNA: 3'- aUUGG---CGGGCGUCGaCGa-------GCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 153395 | 0.78 | 0.156804 |
Target: 5'- gAACCGgUCGCGGUcggcccGCUCGCGCGCCc -3' miRNA: 3'- aUUGGCgGGCGUCGa-----CGAGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 43063 | 0.78 | 0.160771 |
Target: 5'- gAGCCGCCgGCcgAGCgcgccggGCUCGgGCGCCg -3' miRNA: 3'- aUUGGCGGgCG--UCGa------CGAGCgCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 109439 | 0.77 | 0.173219 |
Target: 5'- --cCCGCCUGCGGCUGgagGCGCGCCu -3' miRNA: 3'- auuGGCGGGCGUCGACgagCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 60087 | 0.77 | 0.177556 |
Target: 5'- gGACCGCCCGCAuGCUGCagUCGuCGacgACCa -3' miRNA: 3'- aUUGGCGGGCGU-CGACG--AGC-GCg--UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 79485 | 0.77 | 0.177556 |
Target: 5'- --gUCGaCCCGCAGCUGCUgCGC-CGCCg -3' miRNA: 3'- auuGGC-GGGCGUCGACGA-GCGcGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 97658 | 0.76 | 0.191149 |
Target: 5'- gGAgCGCCgGCGGCUGUaCGCGgACCg -3' miRNA: 3'- aUUgGCGGgCGUCGACGaGCGCgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 138610 | 0.76 | 0.19588 |
Target: 5'- -cGCUGCCCGCuGaccgGgUCGCGCACCa -3' miRNA: 3'- auUGGCGGGCGuCga--CgAGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 139145 | 0.76 | 0.19588 |
Target: 5'- -cGCCGCCUGCAGCUGUcggguggcggccUCGCuGgACCg -3' miRNA: 3'- auUGGCGGGCGUCGACG------------AGCG-CgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 140191 | 0.76 | 0.215835 |
Target: 5'- gGGCCGCCUGCGGCcggUGCUgGUGUGCg -3' miRNA: 3'- aUUGGCGGGCGUCG---ACGAgCGCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 37162 | 0.76 | 0.215835 |
Target: 5'- -cGCCGCgCCGCcuggcgGGCcGCUCgGCGCGCCa -3' miRNA: 3'- auUGGCG-GGCG------UCGaCGAG-CGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 86042 | 0.75 | 0.221088 |
Target: 5'- cGACCugauCCUGCuGCUGCUCGCcgGCACCc -3' miRNA: 3'- aUUGGc---GGGCGuCGACGAGCG--CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 125303 | 0.75 | 0.237506 |
Target: 5'- -cACCGCCCGCAcCaGCUCGgGgGCCa -3' miRNA: 3'- auUGGCGGGCGUcGaCGAGCgCgUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 72231 | 0.75 | 0.237506 |
Target: 5'- gGGCCGUCgaGCAGCUGCggccCGCGguCCa -3' miRNA: 3'- aUUGGCGGg-CGUCGACGa---GCGCguGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 91369 | 0.75 | 0.249009 |
Target: 5'- gGGCCGCCCGCGGCacaaaacaUCGC-CGCCg -3' miRNA: 3'- aUUGGCGGGCGUCGacg-----AGCGcGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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