miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 4600 0.66 0.703378
Target:  5'- gAGCgGgCCGCuuCUuCUUGCGCGCCg -3'
miRNA:   3'- aUUGgCgGGCGucGAcGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 113573 0.66 0.703378
Target:  5'- -cACCGCCaGcCAGCUGCUgcCcCGCACg -3'
miRNA:   3'- auUGGCGGgC-GUCGACGA--GcGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 82174 0.66 0.703378
Target:  5'- cGGCCGCgguuuccgCCGCAGCgGCggcaGUGcCGCCu -3'
miRNA:   3'- aUUGGCG--------GGCGUCGaCGag--CGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 113626 0.66 0.703378
Target:  5'- gAAUCGCCUGC-GCgGC-CG-GCGCCg -3'
miRNA:   3'- aUUGGCGGGCGuCGaCGaGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 134944 0.66 0.703378
Target:  5'- gUGACCuggugcgggGCgCCGCGGCcacccaUGC-CGCGUGCCu -3'
miRNA:   3'- -AUUGG---------CG-GGCGUCG------ACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 90408 0.66 0.702395
Target:  5'- gGGCCGgcgcguuCCCGCGGCcggGCUUGaggcgGUACCa -3'
miRNA:   3'- aUUGGC-------GGGCGUCGa--CGAGCg----CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 61869 0.66 0.693519
Target:  5'- cGGCCcaGCCCgGCGGCcccCUCggGCGCGCCc -3'
miRNA:   3'- aUUGG--CGGG-CGUCGac-GAG--CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121616 0.66 0.693519
Target:  5'- --cCCGCCaaacacgcgauaCGCGGCcGacggCGCGCGCCu -3'
miRNA:   3'- auuGGCGG------------GCGUCGaCga--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 84685 0.66 0.693519
Target:  5'- gAACCGUUCGCgcuuucgggcgAGCaGCUCGCcguGCACg -3'
miRNA:   3'- aUUGGCGGGCG-----------UCGaCGAGCG---CGUGg -5'
5115 3' -60.4 NC_001798.1 + 32785 0.66 0.693519
Target:  5'- gGGCgCGCCCGCgccGGCcgGCgacgccccCGCGgGCCa -3'
miRNA:   3'- aUUG-GCGGGCG---UCGa-CGa-------GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 27898 0.66 0.693519
Target:  5'- cAGCCGCCCGCca-UGUccCGC-CGCCg -3'
miRNA:   3'- aUUGGCGGGCGucgACGa-GCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 72179 0.66 0.693519
Target:  5'- aUGGCCGacaaCaucgaGCAGCUGCUgCGCGaGCUg -3'
miRNA:   3'- -AUUGGCg---Gg----CGUCGACGA-GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 94993 0.66 0.692531
Target:  5'- cGGCCGCcugggccCCGCAGg-GCggCGCGgGCCu -3'
miRNA:   3'- aUUGGCG-------GGCGUCgaCGa-GCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 149730 0.66 0.683611
Target:  5'- cGGCC-CCCGCGGCgcaGCa-GCGCggggGCCg -3'
miRNA:   3'- aUUGGcGGGCGUCGa--CGagCGCG----UGG- -5'
5115 3' -60.4 NC_001798.1 + 142693 0.66 0.683611
Target:  5'- --cCCGCCCGCuuGCauauuccCUUGCGCGCg -3'
miRNA:   3'- auuGGCGGGCGu-CGac-----GAGCGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 106212 0.66 0.683611
Target:  5'- gAGCCggGUCaCGCGGCUGa-CGCGCAgCg -3'
miRNA:   3'- aUUGG--CGG-GCGUCGACgaGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 90876 0.66 0.683611
Target:  5'- aAAUCGCUCGUggAGCUGggCGgCGCGCa -3'
miRNA:   3'- aUUGGCGGGCG--UCGACgaGC-GCGUGg -5'
5115 3' -60.4 NC_001798.1 + 60210 0.66 0.683611
Target:  5'- gGACCuggGCgCUGguGCUGgaCGaCGCGCCc -3'
miRNA:   3'- aUUGG---CG-GGCguCGACgaGC-GCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 33753 0.66 0.683611
Target:  5'- --cCCGCCCGCAcacCUGCcCGCcaCGCCc -3'
miRNA:   3'- auuGGCGGGCGUc--GACGaGCGc-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 33646 0.66 0.683611
Target:  5'- --cCCGCCCGCAcacCUGCcCGCcaCGCCc -3'
miRNA:   3'- auuGGCGGGCGUc--GACGaGCGc-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.