Results 41 - 60 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5115 | 3' | -60.4 | NC_001798.1 | + | 51939 | 0.73 | 0.334429 |
Target: 5'- -cGCCGCCgUGCcGCUGCUCaGCGCgggagggGCCg -3' miRNA: 3'- auUGGCGG-GCGuCGACGAG-CGCG-------UGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 2203 | 0.73 | 0.335169 |
Target: 5'- aGGCCGCCgCGCGGCgcaGCgggcccgaggCGCGCAgCg -3' miRNA: 3'- aUUGGCGG-GCGUCGa--CGa---------GCGCGUgG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 28547 | 0.72 | 0.34263 |
Target: 5'- --cCCGCCCGCAGgUGUgcuucUCGcCGCGCg -3' miRNA: 3'- auuGGCGGGCGUCgACG-----AGC-GCGUGg -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 25193 | 0.72 | 0.34263 |
Target: 5'- -cGCCGCCgcCGCGGCcGC-CGCGCcCCg -3' miRNA: 3'- auUGGCGG--GCGUCGaCGaGCGCGuGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 114279 | 0.72 | 0.34263 |
Target: 5'- cGGCCuGUCCGUGGCgUGCgUGUGCACCa -3' miRNA: 3'- aUUGG-CGGGCGUCG-ACGaGCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 25005 | 0.72 | 0.34263 |
Target: 5'- -cACCGUcgCCGCGGCcgacucGCUCGCcGCGCCc -3' miRNA: 3'- auUGGCG--GGCGUCGa-----CGAGCG-CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 24855 | 0.72 | 0.350211 |
Target: 5'- aGGCCG-CCGUGGCcGCcgUGCGCGCCg -3' miRNA: 3'- aUUGGCgGGCGUCGaCGa-GCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 4194 | 0.72 | 0.35791 |
Target: 5'- --cCCGCCCGCGGCgUGgUCuGCgGCGCUg -3' miRNA: 3'- auuGGCGGGCGUCG-ACgAG-CG-CGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 96932 | 0.72 | 0.35791 |
Target: 5'- -cGCCGCCCGCGcGCgagcGCUCuGUGUGCUg -3' miRNA: 3'- auUGGCGGGCGU-CGa---CGAG-CGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 78819 | 0.72 | 0.365727 |
Target: 5'- -cGCCGCCCGCGGCgacgGCcccggccccUgGCGCGgCa -3' miRNA: 3'- auUGGCGGGCGUCGa---CG---------AgCGCGUgG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 78043 | 0.72 | 0.365727 |
Target: 5'- gAGCC-CCuggCGCGGCUGCU-GCGCAUCg -3' miRNA: 3'- aUUGGcGG---GCGUCGACGAgCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 530 | 0.72 | 0.365727 |
Target: 5'- ---gCGCCCGCGGCcccgaGCUCGCaGCAgCCc -3' miRNA: 3'- auugGCGGGCGUCGa----CGAGCG-CGU-GG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 137942 | 0.72 | 0.373661 |
Target: 5'- cGGCCGCCCgguccgccGCGcGCUGCUCcCGCuCCa -3' miRNA: 3'- aUUGGCGGG--------CGU-CGACGAGcGCGuGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 17707 | 0.72 | 0.381711 |
Target: 5'- cAGCCGCgccUCGUGGCucgUGCUgGCGUACCa -3' miRNA: 3'- aUUGGCG---GGCGUCG---ACGAgCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 28978 | 0.72 | 0.381711 |
Target: 5'- --uCCGCCCGCcccagggggcGGCgccgGCcaacCGCGCGCCg -3' miRNA: 3'- auuGGCGGGCG----------UCGa---CGa---GCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 104604 | 0.71 | 0.389876 |
Target: 5'- gGGCCGCCgGUAGCaccccGUg-GCGCACCa -3' miRNA: 3'- aUUGGCGGgCGUCGa----CGagCGCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 14084 | 0.71 | 0.389876 |
Target: 5'- cGACCGCuCCaUAGCUGCUguacccCGgGCACCc -3' miRNA: 3'- aUUGGCG-GGcGUCGACGA------GCgCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 71830 | 0.71 | 0.389876 |
Target: 5'- -cGCUGUCCGC-GCUGCuccccgUCGgGCGCCu -3' miRNA: 3'- auUGGCGGGCGuCGACG------AGCgCGUGG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 76522 | 0.71 | 0.389876 |
Target: 5'- ---aCGCCCucgacGCGGC-GCUCGCGCAgCa -3' miRNA: 3'- auugGCGGG-----CGUCGaCGAGCGCGUgG- -5' |
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5115 | 3' | -60.4 | NC_001798.1 | + | 53892 | 0.71 | 0.389876 |
Target: 5'- ----gGCCCGCGGagacGUUUGCGCGCCa -3' miRNA: 3'- auuggCGGGCGUCga--CGAGCGCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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