miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 53303 0.66 0.713179
Target:  5'- -cGCCGaUCGCAGCguccgGCUggcggCGCGgCACCa -3'
miRNA:   3'- auUGGCgGGCGUCGa----CGA-----GCGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 154018 0.66 0.713179
Target:  5'- gGACCauuugggaGUCUGCGGUUGggaGCGCGCCg -3'
miRNA:   3'- aUUGG--------CGGGCGUCGACgagCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 153860 0.66 0.713179
Target:  5'- --cCCGCCCucgcucggGgGGCUGUUCGCcCACUc -3'
miRNA:   3'- auuGGCGGG--------CgUCGACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 95110 0.66 0.713179
Target:  5'- -uGCgGCCCGUgaugGC-CGCGCGCCc -3'
miRNA:   3'- auUGgCGGGCGucgaCGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 80304 0.66 0.713179
Target:  5'- aAACCGaCCCGCuGGCgccCUgGCGCucgGCCu -3'
miRNA:   3'- aUUGGC-GGGCG-UCGac-GAgCGCG---UGG- -5'
5115 3' -60.4 NC_001798.1 + 24408 0.66 0.713179
Target:  5'- -uGCCGUCgGCGGCgGCgUCGCcgGCCg -3'
miRNA:   3'- auUGGCGGgCGUCGaCG-AGCGcgUGG- -5'
5115 3' -60.4 NC_001798.1 + 83848 0.66 0.722914
Target:  5'- --cCCGUCCggGCGGC-GCUgGCGgGCCc -3'
miRNA:   3'- auuGGCGGG--CGUCGaCGAgCGCgUGG- -5'
5115 3' -60.4 NC_001798.1 + 24458 0.66 0.713179
Target:  5'- -uACgGCgCCGCGGgggUGCUCGC-CGCCc -3'
miRNA:   3'- auUGgCG-GGCGUCg--ACGAGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 79807 0.66 0.712202
Target:  5'- aGGCCGCCaacuuuCAGCUGUUCGgucgcuuCGuCGCCa -3'
miRNA:   3'- aUUGGCGGgc----GUCGACGAGC-------GC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 138122 0.66 0.707306
Target:  5'- cGGCCGUCUgaaacgccuggcgaaGCuGCUGCggUCGCGCcCCc -3'
miRNA:   3'- aUUGGCGGG---------------CGuCGACG--AGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 116395 0.66 0.707306
Target:  5'- cGACgGCCgGCuGCUGCacaacacccaggccCGCGCgGCCg -3'
miRNA:   3'- aUUGgCGGgCGuCGACGa-------------GCGCG-UGG- -5'
5115 3' -60.4 NC_001798.1 + 134944 0.66 0.703378
Target:  5'- gUGACCuggugcgggGCgCCGCGGCcacccaUGC-CGCGUGCCu -3'
miRNA:   3'- -AUUGG---------CG-GGCGUCG------ACGaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 113626 0.66 0.703378
Target:  5'- gAAUCGCCUGC-GCgGC-CG-GCGCCg -3'
miRNA:   3'- aUUGGCGGGCGuCGaCGaGCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 82174 0.66 0.703378
Target:  5'- cGGCCGCgguuuccgCCGCAGCgGCggcaGUGcCGCCu -3'
miRNA:   3'- aUUGGCG--------GGCGUCGaCGag--CGC-GUGG- -5'
5115 3' -60.4 NC_001798.1 + 113573 0.66 0.703378
Target:  5'- -cACCGCCaGcCAGCUGCUgcCcCGCACg -3'
miRNA:   3'- auUGGCGGgC-GUCGACGA--GcGCGUGg -5'
5115 3' -60.4 NC_001798.1 + 4600 0.66 0.703378
Target:  5'- gAGCgGgCCGCuuCUuCUUGCGCGCCg -3'
miRNA:   3'- aUUGgCgGGCGucGAcGAGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 90408 0.66 0.702395
Target:  5'- gGGCCGgcgcguuCCCGCGGCcggGCUUGaggcgGUACCa -3'
miRNA:   3'- aUUGGC-------GGGCGUCGa--CGAGCg----CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 61869 0.66 0.693519
Target:  5'- cGGCCcaGCCCgGCGGCcccCUCggGCGCGCCc -3'
miRNA:   3'- aUUGG--CGGG-CGUCGac-GAG--CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 121616 0.66 0.693519
Target:  5'- --cCCGCCaaacacgcgauaCGCGGCcGacggCGCGCGCCu -3'
miRNA:   3'- auuGGCGG------------GCGUCGaCga--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 84685 0.66 0.693519
Target:  5'- gAACCGUUCGCgcuuucgggcgAGCaGCUCGCcguGCACg -3'
miRNA:   3'- aUUGGCGGGCG-----------UCGaCGAGCG---CGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.