miRNA display CGI


Results 61 - 80 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 3' -60.4 NC_001798.1 + 76522 0.71 0.389876
Target:  5'- ---aCGCCCucgacGCGGC-GCUCGCGCAgCa -3'
miRNA:   3'- auugGCGGG-----CGUCGaCGAGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 94195 0.71 0.398155
Target:  5'- gGGCCGUgcccccugCUGCAGCUcCUCGCGCGgCg -3'
miRNA:   3'- aUUGGCG--------GGCGUCGAcGAGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 77485 0.71 0.398155
Target:  5'- -cGCgGCCCGCGcgacgaccGCUGCUCGgGaaaGCCu -3'
miRNA:   3'- auUGgCGGGCGU--------CGACGAGCgCg--UGG- -5'
5115 3' -60.4 NC_001798.1 + 106665 0.71 0.406545
Target:  5'- -cACgCGCCUGCguucggucaGGCUGCUCGUGCgagcggGCCu -3'
miRNA:   3'- auUG-GCGGGCG---------UCGACGAGCGCG------UGG- -5'
5115 3' -60.4 NC_001798.1 + 85895 0.71 0.406545
Target:  5'- gGACugCGCCCGC--CUGCUCGacuGCACCg -3'
miRNA:   3'- aUUG--GCGGGCGucGACGAGCg--CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3121 0.71 0.415045
Target:  5'- -cACgGCCaCGCGGCccGCcucCGCGCGCCg -3'
miRNA:   3'- auUGgCGG-GCGUCGa-CGa--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 74341 0.71 0.415045
Target:  5'- cGACCGCCCcaaGguGCgGUgggCGgGCGCCa -3'
miRNA:   3'- aUUGGCGGG---CguCGaCGa--GCgCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 72323 0.71 0.415045
Target:  5'- cUGGCgGCCCggggggugcuGCAGgaGCUCgccgaGCGCGCCg -3'
miRNA:   3'- -AUUGgCGGG----------CGUCgaCGAG-----CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 132307 0.71 0.423653
Target:  5'- gGACCGCgUGCuGCUGCuccacUCGCuCACCc -3'
miRNA:   3'- aUUGGCGgGCGuCGACG-----AGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 120319 0.71 0.432368
Target:  5'- cGACCGCCaCGCGaacGCUGCgaaaCGCcccggggugcaGCGCCa -3'
miRNA:   3'- aUUGGCGG-GCGU---CGACGa---GCG-----------CGUGG- -5'
5115 3' -60.4 NC_001798.1 + 48361 0.71 0.432368
Target:  5'- cGGCCGCCCGgGGCcGCcccgcgggGCGUGCCg -3'
miRNA:   3'- aUUGGCGGGCgUCGaCGag------CGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 23648 0.71 0.432368
Target:  5'- gGGCCGCCUGgAGCgccgccggGCcCGCGCGgCg -3'
miRNA:   3'- aUUGGCGGGCgUCGa-------CGaGCGCGUgG- -5'
5115 3' -60.4 NC_001798.1 + 25470 0.71 0.432368
Target:  5'- -cGCCGCCUuCGGCccGCU-GCGCGCCu -3'
miRNA:   3'- auUGGCGGGcGUCGa-CGAgCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 71238 0.7 0.43853
Target:  5'- gAGCCGCCCuccGCcggggcccagcaacGGCUcCUCGCGCugCu -3'
miRNA:   3'- aUUGGCGGG---CG--------------UCGAcGAGCGCGugG- -5'
5115 3' -60.4 NC_001798.1 + 110244 0.7 0.441186
Target:  5'- gAGCCGaa-GCGGCUGg-UGCGCACCg -3'
miRNA:   3'- aUUGGCgggCGUCGACgaGCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 1363 0.7 0.450105
Target:  5'- gGGCCGCCgCGCA-CgGCgUCGCGCcCCa -3'
miRNA:   3'- aUUGGCGG-GCGUcGaCG-AGCGCGuGG- -5'
5115 3' -60.4 NC_001798.1 + 52075 0.7 0.450105
Target:  5'- gUGGCCGCCCGCuacGCgggGCgcaugacguacaUCGC-CACCg -3'
miRNA:   3'- -AUUGGCGGGCGu--CGa--CG------------AGCGcGUGG- -5'
5115 3' -60.4 NC_001798.1 + 25937 0.7 0.450105
Target:  5'- -uGCUGCCCGcCGGCagUGCgcCGUGCGCUg -3'
miRNA:   3'- auUGGCGGGC-GUCG--ACGa-GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 3579 0.7 0.453701
Target:  5'- cGGCCcgcGCCaCGCugccggagaugaaggAGCUGCUguUGCGCGCCg -3'
miRNA:   3'- aUUGG---CGG-GCG---------------UCGACGA--GCGCGUGG- -5'
5115 3' -60.4 NC_001798.1 + 54483 0.7 0.459123
Target:  5'- cGACC-CCCGCGGCcccucggaggUGCagGCGcCACCg -3'
miRNA:   3'- aUUGGcGGGCGUCG----------ACGagCGC-GUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.