miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 5' -50.7 NC_001798.1 + 142126 0.66 0.98959
Target:  5'- -cGaGCGCGCUgccggacgcgGCACAGGugGuGCAc -3'
miRNA:   3'- aaC-CGCGCGAa---------CGUGUUUugCuUGUa -5'
5115 5' -50.7 NC_001798.1 + 125483 0.66 0.98959
Target:  5'- cUGGUgGCGCUUGgGCGucGCGGugGc -3'
miRNA:   3'- aACCG-CGCGAACgUGUuuUGCUugUa -5'
5115 5' -50.7 NC_001798.1 + 65359 0.66 0.98959
Target:  5'- gUGGcCGCGC-UGCGCAcGAUG-GCGUa -3'
miRNA:   3'- aACC-GCGCGaACGUGUuUUGCuUGUA- -5'
5115 5' -50.7 NC_001798.1 + 18320 0.66 0.98959
Target:  5'- -gGGcCGUGUUUGUcuccgGCGGGACGGACGc -3'
miRNA:   3'- aaCC-GCGCGAACG-----UGUUUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 88690 0.66 0.988103
Target:  5'- -aGGC-CGCg-GCACAAAACGAAa-- -3'
miRNA:   3'- aaCCGcGCGaaCGUGUUUUGCUUgua -5'
5115 5' -50.7 NC_001798.1 + 153044 0.66 0.98464
Target:  5'- -cGGCGCGCgguuggccgGCGCcgcccccuGGGGCGGGCGg -3'
miRNA:   3'- aaCCGCGCGaa-------CGUG--------UUUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 14999 0.66 0.98464
Target:  5'- -gGGCGagGCgUGUugGGGGCGAGCGg -3'
miRNA:   3'- aaCCGCg-CGaACGugUUUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 78130 0.66 0.982644
Target:  5'- gUGGgGCGCcugGCggACGAcauGACGAGCGUg -3'
miRNA:   3'- aACCgCGCGaa-CG--UGUU---UUGCUUGUA- -5'
5115 5' -50.7 NC_001798.1 + 150475 0.66 0.98959
Target:  5'- -gGGCGCGCggcGCGCcccGACGAcugugGCAg -3'
miRNA:   3'- aaCCGCGCGaa-CGUGuu-UUGCU-----UGUa -5'
5115 5' -50.7 NC_001798.1 + 63577 0.67 0.975482
Target:  5'- gUUGGUGCGCagGUACGcgauggcGGCGAACGa -3'
miRNA:   3'- -AACCGCGCGaaCGUGUu------UUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 120370 0.67 0.969637
Target:  5'- -gGGCGagGCUgUGCACGAcgcAGCGGGCGa -3'
miRNA:   3'- aaCCGCg-CGA-ACGUGUU---UUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 85997 0.67 0.972672
Target:  5'- -cGGgGCGCUgGCGCAGGGgGGugAg -3'
miRNA:   3'- aaCCgCGCGAaCGUGUUUUgCUugUa -5'
5115 5' -50.7 NC_001798.1 + 37186 0.67 0.972672
Target:  5'- -cGGCGCGCcagGCGCcgcgcCGAACGa -3'
miRNA:   3'- aaCCGCGCGaa-CGUGuuuu-GCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 10627 0.67 0.974662
Target:  5'- -gGGCGCGCaUGCACGccgcauccacgaccGucuCGAGCAc -3'
miRNA:   3'- aaCCGCGCGaACGUGU--------------Uuu-GCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 1663 0.67 0.980459
Target:  5'- -aGGCGCGCgUGCGCGGccuccACGcGCGc -3'
miRNA:   3'- aaCCGCGCGaACGUGUUu----UGCuUGUa -5'
5115 5' -50.7 NC_001798.1 + 150422 0.68 0.962861
Target:  5'- -gGGCG-GCggcgGCGCGGGGCGGACu- -3'
miRNA:   3'- aaCCGCgCGaa--CGUGUUUUGCUUGua -5'
5115 5' -50.7 NC_001798.1 + 96035 0.68 0.962861
Target:  5'- -gGGCGgGCggGCGgGcGACGGGCAUa -3'
miRNA:   3'- aaCCGCgCGaaCGUgUuUUGCUUGUA- -5'
5115 5' -50.7 NC_001798.1 + 111905 0.68 0.955096
Target:  5'- -aGGUGCGCcuggGC-CAGGGCGAAUAc -3'
miRNA:   3'- aaCCGCGCGaa--CGuGUUUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 77591 0.68 0.955096
Target:  5'- -gGGCGCGCccUGCAgGAGcUGGGCAa -3'
miRNA:   3'- aaCCGCGCGa-ACGUgUUUuGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 130376 0.68 0.955096
Target:  5'- -aGGCGCGCgUGCACcGAAgcACGGcCAUg -3'
miRNA:   3'- aaCCGCGCGaACGUG-UUU--UGCUuGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.