miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5115 5' -50.7 NC_001798.1 + 143053 1.03 0.016068
Target:  5'- gUUGGCGCGCUUGCACAAAACGAACAUc -3'
miRNA:   3'- -AACCGCGCGAACGUGUUUUGCUUGUA- -5'
5115 5' -50.7 NC_001798.1 + 86161 0.73 0.751438
Target:  5'- -gGGCGCGCaUGCGCGAcGCGGccccGCGUu -3'
miRNA:   3'- aaCCGCGCGaACGUGUUuUGCU----UGUA- -5'
5115 5' -50.7 NC_001798.1 + 117574 0.73 0.751438
Target:  5'- -cGGCGCGCcgGCAUGGAccACGGGCAg -3'
miRNA:   3'- aaCCGCGCGaaCGUGUUU--UGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 71127 0.73 0.78167
Target:  5'- aUGGCGCGCgUGCG---GACGGACGc -3'
miRNA:   3'- aACCGCGCGaACGUguuUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 85500 0.71 0.870982
Target:  5'- -gGGCGCGCcccacUGCGCc--GCGAGCAUc -3'
miRNA:   3'- aaCCGCGCGa----ACGUGuuuUGCUUGUA- -5'
5115 5' -50.7 NC_001798.1 + 78049 0.71 0.878703
Target:  5'- cUGGCGCgGCUgcUGCGCAucGCGGAgGg -3'
miRNA:   3'- aACCGCG-CGA--ACGUGUuuUGCUUgUa -5'
5115 5' -50.7 NC_001798.1 + 35145 0.71 0.886175
Target:  5'- -gGGCGCGCcggUGCGCGGAGC-AGCc- -3'
miRNA:   3'- aaCCGCGCGa--ACGUGUUUUGcUUGua -5'
5115 5' -50.7 NC_001798.1 + 125712 0.7 0.89339
Target:  5'- -gGGCGCGCgcggggGCGgCGAGAUGAGCc- -3'
miRNA:   3'- aaCCGCGCGaa----CGU-GUUUUGCUUGua -5'
5115 5' -50.7 NC_001798.1 + 36488 0.7 0.900345
Target:  5'- -gGGgGCGCcgGCGCGAcGCGGGCGg -3'
miRNA:   3'- aaCCgCGCGaaCGUGUUuUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 150348 0.7 0.913458
Target:  5'- -gGGCGCGCggUGCGCGuccaccggcacGGCGGGCGg -3'
miRNA:   3'- aaCCGCGCGa-ACGUGUu----------UUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 31347 0.69 0.925491
Target:  5'- -gGGCGCGCgcagGCGCGgcGggUGGGCGa -3'
miRNA:   3'- aaCCGCGCGaa--CGUGU--UuuGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 92320 0.69 0.9311
Target:  5'- -cGGCGCGCa-GCGgCGAcGCGGACGUc -3'
miRNA:   3'- aaCCGCGCGaaCGU-GUUuUGCUUGUA- -5'
5115 5' -50.7 NC_001798.1 + 53658 0.69 0.936436
Target:  5'- gUGGCGgGgUUGCGCGAcGCGGcccACAg -3'
miRNA:   3'- aACCGCgCgAACGUGUUuUGCU---UGUa -5'
5115 5' -50.7 NC_001798.1 + 2649 0.69 0.938495
Target:  5'- -gGGCucuuGCGCUUGCGCGccucccgcggcgcggAGGCGGGCGc -3'
miRNA:   3'- aaCCG----CGCGAACGUGU---------------UUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 79667 0.69 0.941502
Target:  5'- -cGGCGCGCUgcugaUGCGuccCGAGGCGGccuGCGUg -3'
miRNA:   3'- aaCCGCGCGA-----ACGU---GUUUUGCU---UGUA- -5'
5115 5' -50.7 NC_001798.1 + 134081 0.69 0.946298
Target:  5'- -aGGCGCGCgcGCGCuucGCGGAgGUg -3'
miRNA:   3'- aaCCGCGCGaaCGUGuuuUGCUUgUA- -5'
5115 5' -50.7 NC_001798.1 + 57747 0.69 0.946298
Target:  5'- -gGGCGCGCccgGCGCA--GCGAGgAg -3'
miRNA:   3'- aaCCGCGCGaa-CGUGUuuUGCUUgUa -5'
5115 5' -50.7 NC_001798.1 + 111905 0.68 0.955096
Target:  5'- -aGGUGCGCcuggGC-CAGGGCGAAUAc -3'
miRNA:   3'- aaCCGCGCGaa--CGuGUUUUGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 77591 0.68 0.955096
Target:  5'- -gGGCGCGCccUGCAgGAGcUGGGCAa -3'
miRNA:   3'- aaCCGCGCGa-ACGUgUUUuGCUUGUa -5'
5115 5' -50.7 NC_001798.1 + 130376 0.68 0.955096
Target:  5'- -aGGCGCGCgUGCACcGAAgcACGGcCAUg -3'
miRNA:   3'- aaCCGCGCGaACGUG-UUU--UGCUuGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.