Results 1 - 20 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 142529 | 1.09 | 0.000423 |
Target: 5'- cGUCCGCCCGACCACACCCCCCGCCCCc -3' miRNA: 3'- -CAGGCGGGCUGGUGUGGGGGGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 25153 | 0.92 | 0.007973 |
Target: 5'- -gCCGCCCcucccgcgggGGCCGCGCCCCCCGCCCCg -3' miRNA: 3'- caGGCGGG----------CUGGUGUGGGGGGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 151085 | 0.88 | 0.016765 |
Target: 5'- -cCCGCCCGACCcccgccCGCCCCCCGCCCg -3' miRNA: 3'- caGGCGGGCUGGu-----GUGGGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 145416 | 0.85 | 0.023966 |
Target: 5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3' miRNA: 3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 145458 | 0.85 | 0.023966 |
Target: 5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3' miRNA: 3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 145500 | 0.85 | 0.023966 |
Target: 5'- -cCCGCCCGGCCgccGCGCgCCCCCGCCCg -3' miRNA: 3'- caGGCGGGCUGG---UGUG-GGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 48390 | 0.84 | 0.030905 |
Target: 5'- -gCCGCCgCGACCGCACgggCCCCCGCCCg -3' miRNA: 3'- caGGCGG-GCUGGUGUG---GGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 111733 | 0.83 | 0.037849 |
Target: 5'- -cCCGCuuGGCCcccGCGCCCCCgGCCCCg -3' miRNA: 3'- caGGCGggCUGG---UGUGGGGGgCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 54860 | 0.83 | 0.034204 |
Target: 5'- -gCCGCCUGgccggccgaaaGCCACGCCcCCCCGCCCCc -3' miRNA: 3'- caGGCGGGC-----------UGGUGUGG-GGGGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 710 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 860 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 25092 | 0.82 | 0.041874 |
Target: 5'- -gCCGCCgGGCgGCGCCCCgCGCCCCc -3' miRNA: 3'- caGGCGGgCUGgUGUGGGGgGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 128318 | 0.82 | 0.042944 |
Target: 5'- cGUCCGCcgCCGaaGCCGuCGCCCCCCGCCCg -3' miRNA: 3'- -CAGGCG--GGC--UGGU-GUGGGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 890 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 800 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 830 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 35743 | 0.82 | 0.04083 |
Target: 5'- -cCCGCCCGGCCGCccACUCCCCGCUCg -3' miRNA: 3'- caGGCGGGCUGGUG--UGGGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 770 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 680 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 740 | 0.82 | 0.042944 |
Target: 5'- -cCCGCCCGACCccCGCCCgCCCGaCCCCc -3' miRNA: 3'- caGGCGGGCUGGu-GUGGG-GGGC-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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