miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 56565 0.66 0.89781
Target:  5'- gCGACGGCcaccuucuccgccGGCGAGgagucgUCCCccaggaaccaGGCAAACg -3'
miRNA:   3'- -GUUGCCGc------------CCGCUCa-----AGGG----------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 57742 0.69 0.780146
Target:  5'- --cCGGUGGGCGcg--CCCGGCGcAGCg -3'
miRNA:   3'- guuGCCGCCCGCucaaGGGUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 58275 0.66 0.918653
Target:  5'- aCAGCaGCGGGUccguGAGgUCCCGGgGcGCg -3'
miRNA:   3'- -GUUGcCGCCCG----CUCaAGGGUCgUuUG- -5'
5116 5' -55.6 NC_001798.1 + 61329 0.71 0.691799
Target:  5'- gGGCGGCGGGCuuGGGUgUCCCGGa---- -3'
miRNA:   3'- gUUGCCGCCCG--CUCA-AGGGUCguuug -5'
5116 5' -55.6 NC_001798.1 + 64508 0.7 0.712025
Target:  5'- aGGgGGUGGGCGGGgUCCaGGCAAGg -3'
miRNA:   3'- gUUgCCGCCCGCUCaAGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 70291 0.67 0.849777
Target:  5'- aCGGCGGCguuucuguugucGGGCGcggcGGUcggCCCGGCGGAg -3'
miRNA:   3'- -GUUGCCG------------CCCGC----UCAa--GGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 71403 0.66 0.906727
Target:  5'- uUggUGGCGGGgGug--CCCGcGCGGACg -3'
miRNA:   3'- -GuuGCCGCCCgCucaaGGGU-CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 72696 0.7 0.721041
Target:  5'- -uGCGGCGGGaaauccaCGGGUUCCUGGCc--- -3'
miRNA:   3'- guUGCCGCCC-------GCUCAAGGGUCGuuug -5'
5116 5' -55.6 NC_001798.1 + 73648 0.72 0.609582
Target:  5'- gAugGGCGGGgGGGUUCgggCGGCGGAa -3'
miRNA:   3'- gUugCCGCCCgCUCAAGg--GUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 75135 0.68 0.841695
Target:  5'- gGGCGGCGGcGaCGAcGggCCC-GCGAGCc -3'
miRNA:   3'- gUUGCCGCC-C-GCU-CaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 76651 0.66 0.893847
Target:  5'- -uGCGGCaGGCGAGggCCauggaGGCGGc- -3'
miRNA:   3'- guUGCCGcCCGCUCaaGGg----UCGUUug -5'
5116 5' -55.6 NC_001798.1 + 77226 0.67 0.880038
Target:  5'- --cCGuGCGGGCGcauGGcgCCCuGGCGGACg -3'
miRNA:   3'- guuGC-CGCCCGC---UCaaGGG-UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 77565 0.67 0.880038
Target:  5'- gGACGGCcGGgGAccauuccCCCAGCGGGCg -3'
miRNA:   3'- gUUGCCGcCCgCUcaa----GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 83963 0.71 0.671371
Target:  5'- cCGGCGGCgacGGGCGAGggccugCUCGGCGgcgcGACa -3'
miRNA:   3'- -GUUGCCG---CCCGCUCaa----GGGUCGU----UUG- -5'
5116 5' -55.6 NC_001798.1 + 85673 0.67 0.865334
Target:  5'- cCGACGGCGGGgugccCGGGcgccacgCCCAG-AAGCa -3'
miRNA:   3'- -GUUGCCGCCC-----GCUCaa-----GGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 85833 0.73 0.568621
Target:  5'- gCGGgGGCGGGCGGGggCUCGG-GAACg -3'
miRNA:   3'- -GUUgCCGCCCGCUCaaGGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 86631 0.66 0.91281
Target:  5'- -uGCGGCaacgaguucgagGGGCGGGUcuguauagCCCuGCGGGCc -3'
miRNA:   3'- guUGCCG------------CCCGCUCAa-------GGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 91125 0.69 0.798537
Target:  5'- -cGCGG-GGGCGuccucgUCCAGCGAACg -3'
miRNA:   3'- guUGCCgCCCGCucaa--GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 91480 0.69 0.797632
Target:  5'- gGAUGGCGGuGcCGAuGUUCCCcccggcucuuaccGGCGGACc -3'
miRNA:   3'- gUUGCCGCC-C-GCU-CAAGGG-------------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 91576 0.66 0.906727
Target:  5'- -cGCGG-GGGCGccgcGGUUucuuuuuaucggCCCGGCAGGCc -3'
miRNA:   3'- guUGCCgCCCGC----UCAA------------GGGUCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.