miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 31154 0.69 0.780146
Target:  5'- gGGCGGCGGuGCGGGggcgaCCC-GCGGAa -3'
miRNA:   3'- gUUGCCGCC-CGCUCaa---GGGuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 31360 0.67 0.865334
Target:  5'- -cGCGGCGGGUGGGcgaagacgCCgCGGCGGc- -3'
miRNA:   3'- guUGCCGCCCGCUCaa------GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 33280 0.66 0.924253
Target:  5'- gGugGGUGGGCGGGcUggCUGGCGggUa -3'
miRNA:   3'- gUugCCGCCCGCUC-AagGGUCGUuuG- -5'
5116 5' -55.6 NC_001798.1 + 36091 0.74 0.496964
Target:  5'- gGugGGUGGGCGGGUggugggggggggCCCGGCu-GCg -3'
miRNA:   3'- gUugCCGCCCGCUCAa-----------GGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 36425 0.67 0.880038
Target:  5'- gGGCGGUgGGGCGGGgucggggUCgCGGCGGGg -3'
miRNA:   3'- gUUGCCG-CCCGCUCa------AGgGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 36527 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 36569 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 36611 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 38939 0.66 0.91281
Target:  5'- aGGC-GCGuGGCGAGguuUUCCAGCAcGGCg -3'
miRNA:   3'- gUUGcCGC-CCGCUCa--AGGGUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 40139 0.67 0.849777
Target:  5'- gGAUGGCGGGUGuccUCCgAGgGGGCg -3'
miRNA:   3'- gUUGCCGCCCGCucaAGGgUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 42489 0.66 0.893847
Target:  5'- aCAACGuacgGGGCGGGga-CCGGUAGGCa -3'
miRNA:   3'- -GUUGCcg--CCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 43125 0.68 0.824957
Target:  5'- --cCGGCGGGCGcGcgUCCCGcgucacGCGGGCc -3'
miRNA:   3'- guuGCCGCCCGCuCa-AGGGU------CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 43526 0.66 0.922599
Target:  5'- gCGGCGGCcgcgucucccgccaGGGCGGuUUCCCuggGGguGACg -3'
miRNA:   3'- -GUUGCCG--------------CCCGCUcAAGGG---UCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 44687 0.67 0.857659
Target:  5'- aCAACGGCucGGCc----CCCAGCAGGCa -3'
miRNA:   3'- -GUUGCCGc-CCGcucaaGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 52617 0.69 0.789414
Target:  5'- uGACGGCGGGuCGAcGgcCCCcgaGGUggGCa -3'
miRNA:   3'- gUUGCCGCCC-GCU-CaaGGG---UCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 53107 0.7 0.701942
Target:  5'- gGGCGcGCGGcGCGAGcUCCCuGCGgcuGGCg -3'
miRNA:   3'- gUUGC-CGCC-CGCUCaAGGGuCGU---UUG- -5'
5116 5' -55.6 NC_001798.1 + 53541 0.72 0.599298
Target:  5'- --cCGGCGGGCGAcugcGacCCCAGCcuGCa -3'
miRNA:   3'- guuGCCGCCCGCU----CaaGGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 55806 0.71 0.671371
Target:  5'- uCGACGG-GGGUGGGgUCCCAcGCGAcGCa -3'
miRNA:   3'- -GUUGCCgCCCGCUCaAGGGU-CGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 55993 0.66 0.918653
Target:  5'- -cGCGG-GGGCGAGgggCUGGUAGGCg -3'
miRNA:   3'- guUGCCgCCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 56245 0.68 0.807508
Target:  5'- cCGGCGGcCGGGCccggccccgGAGUUaCCgCAGCcGACg -3'
miRNA:   3'- -GUUGCC-GCCCG---------CUCAA-GG-GUCGuUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.