miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 19283 0.68 0.816318
Target:  5'- -uACGGCGuGGUG-GUgCCCGGCGAc- -3'
miRNA:   3'- guUGCCGC-CCGCuCAaGGGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 20348 0.67 0.865334
Target:  5'- aGGCGGUuggcgcugccGGGCGGGUUCggggCGGCAcGCa -3'
miRNA:   3'- gUUGCCG----------CCCGCUCAAGg---GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 20957 0.7 0.731974
Target:  5'- ---aGGCGGGCGGG-UCCgGGgGGAUg -3'
miRNA:   3'- guugCCGCCCGCUCaAGGgUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 22375 0.67 0.872795
Target:  5'- -uGCGGUuccaccuggGGGCGGaacCCCGGCGAGCc -3'
miRNA:   3'- guUGCCG---------CCCGCUcaaGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 23503 0.67 0.884975
Target:  5'- cCAGCGccgcagaccacgccGCGGGCGGGacCCuCGGCGcgGACg -3'
miRNA:   3'- -GUUGC--------------CGCCCGCUCaaGG-GUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 23711 0.68 0.841695
Target:  5'- -cACGGcCGGGCGGc--CCCGGCGGGu -3'
miRNA:   3'- guUGCC-GCCCGCUcaaGGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 24168 0.67 0.887057
Target:  5'- uGGCGGCGGGCcgcuucggcuGGggCCUGGCGcACg -3'
miRNA:   3'- gUUGCCGCCCGc---------UCaaGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 26815 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26845 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26875 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26905 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26949 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26979 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 27009 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 27784 0.73 0.57881
Target:  5'- cCAGCcgGGaCGGGUGAGUUCgCUAGgCAAGCa -3'
miRNA:   3'- -GUUG--CC-GCCCGCUCAAG-GGUC-GUUUG- -5'
5116 5' -55.6 NC_001798.1 + 30146 0.66 0.893847
Target:  5'- aAGCaGCGGGCGGGgggCCgGGguGAg -3'
miRNA:   3'- gUUGcCGCCCGCUCaa-GGgUCguUUg -5'
5116 5' -55.6 NC_001798.1 + 30953 0.71 0.640507
Target:  5'- gGGgGGCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUgCCGCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 30982 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 31015 0.66 0.91281
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 31048 0.66 0.924253
Target:  5'- gGGCGGggguCGGGCGGGggUCgGGCAcuAACc -3'
miRNA:   3'- gUUGCC----GCCCGCUCaaGGgUCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.