Results 21 - 40 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5116 | 5' | -55.6 | NC_001798.1 | + | 1409 | 0.66 | 0.924253 |
Target: 5'- gCAGCGGCGcGCccAGgcCCCAGCGcGCg -3' miRNA: 3'- -GUUGCCGCcCGc-UCaaGGGUCGUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 43526 | 0.66 | 0.922599 |
Target: 5'- gCGGCGGCcgcgucucccgccaGGGCGGuUUCCCuggGGguGACg -3' miRNA: 3'- -GUUGCCG--------------CCCGCUcAAGGG---UCguUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 98630 | 0.66 | 0.918653 |
Target: 5'- gGGCGGCGuGGCcgcGAccgUCgCGGCGAACg -3' miRNA: 3'- gUUGCCGC-CCG---CUca-AGgGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 58275 | 0.66 | 0.918653 |
Target: 5'- aCAGCaGCGGGUccguGAGgUCCCGGgGcGCg -3' miRNA: 3'- -GUUGcCGCCCG----CUCaAGGGUCgUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 31015 | 0.66 | 0.91281 |
Target: 5'- gGGCGGggguCGGGCGGGggUCgGGCGGGg -3' miRNA: 3'- gUUGCC----GCCCGCUCaaGGgUCGUUUg -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 38939 | 0.66 | 0.91281 |
Target: 5'- aGGC-GCGuGGCGAGguuUUCCAGCAcGGCg -3' miRNA: 3'- gUUGcCGC-CCGCUCa--AGGGUCGU-UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 125415 | 0.66 | 0.91281 |
Target: 5'- gCGACGGCcgagaagaGcGGCGAGUgcUCgCAGCAGu- -3' miRNA: 3'- -GUUGCCG--------C-CCGCUCA--AGgGUCGUUug -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 237 | 0.66 | 0.91281 |
Target: 5'- -cGCGGCaGGaCGGGga-CUAGCAGGCu -3' miRNA: 3'- guUGCCGcCC-GCUCaagGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 120384 | 0.66 | 0.918079 |
Target: 5'- aCGACGcaGCGGGCGAuGUccgcgggggccgaUCCC-GUGAGCg -3' miRNA: 3'- -GUUGC--CGCCCGCU-CA-------------AGGGuCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 55993 | 0.66 | 0.918653 |
Target: 5'- -cGCGG-GGGCGAGgggCUGGUAGGCg -3' miRNA: 3'- guUGCCgCCCGCUCaagGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 154199 | 0.67 | 0.872795 |
Target: 5'- ---gGGCGGGaGAGUUCaCuCGGCAcGCa -3' miRNA: 3'- guugCCGCCCgCUCAAG-G-GUCGUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 15378 | 0.67 | 0.872795 |
Target: 5'- cCGugGGCGcGGCgGAGgcgCCCAcCGGACc -3' miRNA: 3'- -GUugCCGC-CCG-CUCaa-GGGUcGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 77565 | 0.67 | 0.880038 |
Target: 5'- gGACGGCcGGgGAccauuccCCCAGCGGGCg -3' miRNA: 3'- gUUGCCGcCCgCUcaa----GGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 36425 | 0.67 | 0.880038 |
Target: 5'- gGGCGGUgGGGCGGGgucggggUCgCGGCGGGg -3' miRNA: 3'- gUUGCCG-CCCGCUCa------AGgGUCGUUUg -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 77226 | 0.67 | 0.880038 |
Target: 5'- --cCGuGCGGGCGcauGGcgCCCuGGCGGACg -3' miRNA: 3'- guuGC-CGCCCGC---UCaaGGG-UCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 105189 | 0.67 | 0.880038 |
Target: 5'- -cGCGGC-GGCGGGgcCCgCGGUggGCg -3' miRNA: 3'- guUGCCGcCCGCUCaaGG-GUCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 23503 | 0.67 | 0.884975 |
Target: 5'- cCAGCGccgcagaccacgccGCGGGCGGGacCCuCGGCGcgGACg -3' miRNA: 3'- -GUUGC--------------CGCCCGCUCaaGG-GUCGU--UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 92045 | 0.67 | 0.885671 |
Target: 5'- uCGGCGaaCGGGCGGGUguagaccccaccCCCAGCGccGGCa -3' miRNA: 3'- -GUUGCc-GCCCGCUCAa-----------GGGUCGU--UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 24168 | 0.67 | 0.887057 |
Target: 5'- uGGCGGCGGGCcgcuucggcuGGggCCUGGCGcACg -3' miRNA: 3'- gUUGCCGCCCGc---------UCaaGGGUCGUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 22375 | 0.67 | 0.872795 |
Target: 5'- -uGCGGUuccaccuggGGGCGGaacCCCGGCGAGCc -3' miRNA: 3'- guUGCCG---------CCCGCUcaaGGGUCGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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