miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 30953 0.71 0.640507
Target:  5'- gGGgGGCGGGCGGGggUCgGGCGGGg -3'
miRNA:   3'- gUUgCCGCCCGCUCaaGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 5922 0.71 0.650813
Target:  5'- gGACGGgGGGCGGgccGUUCCUcGCGcACa -3'
miRNA:   3'- gUUGCCgCCCGCU---CAAGGGuCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 109671 0.71 0.650813
Target:  5'- -cACGGCcguccuccGGGCGccGUUCCUGGCGGGCg -3'
miRNA:   3'- guUGCCG--------CCCGCu-CAAGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 3019 0.71 0.661104
Target:  5'- -cGCGGCGGGCcGGgcUCCGGCcAGCc -3'
miRNA:   3'- guUGCCGCCCGcUCaaGGGUCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 83963 0.71 0.671371
Target:  5'- cCGGCGGCgacGGGCGAGggccugCUCGGCGgcgcGACa -3'
miRNA:   3'- -GUUGCCG---CCCGCUCaa----GGGUCGU----UUG- -5'
5116 5' -55.6 NC_001798.1 + 55806 0.71 0.671371
Target:  5'- uCGACGG-GGGUGGGgUCCCAcGCGAcGCa -3'
miRNA:   3'- -GUUGCCgCCCGCUCaAGGGU-CGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 132155 0.71 0.681606
Target:  5'- --cCGGCGGGCGGGgcgCCCccccCGGACg -3'
miRNA:   3'- guuGCCGCCCGCUCaa-GGGuc--GUUUG- -5'
5116 5' -55.6 NC_001798.1 + 61329 0.71 0.691799
Target:  5'- gGGCGGCGGGCuuGGGUgUCCCGGa---- -3'
miRNA:   3'- gUUGCCGCCCG--CUCA-AGGGUCguuug -5'
5116 5' -55.6 NC_001798.1 + 93122 0.71 0.691799
Target:  5'- --cCGGCGGGCGGGUUUgagCAGCGc-- -3'
miRNA:   3'- guuGCCGCCCGCUCAAGg--GUCGUuug -5'
5116 5' -55.6 NC_001798.1 + 53107 0.7 0.701942
Target:  5'- gGGCGcGCGGcGCGAGcUCCCuGCGgcuGGCg -3'
miRNA:   3'- gUUGC-CGCC-CGCUCaAGGGuCGU---UUG- -5'
5116 5' -55.6 NC_001798.1 + 64508 0.7 0.712025
Target:  5'- aGGgGGUGGGCGGGgUCCaGGCAAGg -3'
miRNA:   3'- gUUgCCGCCCGCUCaAGGgUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 72696 0.7 0.721041
Target:  5'- -uGCGGCGGGaaauccaCGGGUUCCUGGCc--- -3'
miRNA:   3'- guUGCCGCCC-------GCUCAAGGGUCGuuug -5'
5116 5' -55.6 NC_001798.1 + 20957 0.7 0.731974
Target:  5'- ---aGGCGGGCGGG-UCCgGGgGGAUg -3'
miRNA:   3'- guugCCGCCCGCUCaAGGgUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 149975 0.7 0.741822
Target:  5'- cCGACGG-GGGCGcGGcgCCC-GCGGACg -3'
miRNA:   3'- -GUUGCCgCCCGC-UCaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 2404 0.7 0.741822
Target:  5'- gGGCGGCGGcCGAGggCgCCGGCGuguGGCu -3'
miRNA:   3'- gUUGCCGCCcGCUCaaG-GGUCGU---UUG- -5'
5116 5' -55.6 NC_001798.1 + 36569 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 36611 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 36527 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 93525 0.69 0.761217
Target:  5'- --uCGGCGGaacccagGAGUUCgCCGGCGAGCa -3'
miRNA:   3'- guuGCCGCCcg-----CUCAAG-GGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 91817 0.69 0.77169
Target:  5'- gGACcGUGGGCGGGgcccgacgccgccccUCCCAGCAcGCc -3'
miRNA:   3'- gUUGcCGCCCGCUCa--------------AGGGUCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.