miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 142563 1.1 0.002534
Target:  5'- cCAACGGCGGGCGAGUUCCCAGCAAACa -3'
miRNA:   3'- -GUUGCCGCCCGCUCAAGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 3323 0.77 0.364763
Target:  5'- gCGGCGGCGgcGGCGGGcUUCCC-GCGGGCg -3'
miRNA:   3'- -GUUGCCGC--CCGCUC-AAGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 27009 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26905 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26949 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26815 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26875 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26979 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 26845 0.76 0.415429
Target:  5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3'
miRNA:   3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 36091 0.74 0.496964
Target:  5'- gGugGGUGGGCGGGUggugggggggggCCCGGCu-GCg -3'
miRNA:   3'- gUugCCGCCCGCUCAa-----------GGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 150372 0.73 0.52838
Target:  5'- -cACGGCGGGCGGcgcGggCCCGGCc-GCg -3'
miRNA:   3'- guUGCCGCCCGCU---CaaGGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 2766 0.73 0.548385
Target:  5'- gCGGCGGCGgcGGCGGcGgagCUCAGCAGGCg -3'
miRNA:   3'- -GUUGCCGC--CCGCU-Caa-GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 16073 0.73 0.562529
Target:  5'- gGGCGGCGGGCGucuGUgggggcagacagcgcUCCCGG-AAACg -3'
miRNA:   3'- gUUGCCGCCCGCu--CA---------------AGGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 85833 0.73 0.568621
Target:  5'- gCGGgGGCGGGCGGGggCUCGG-GAACg -3'
miRNA:   3'- -GUUgCCGCCCGCUCaaGGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 27784 0.73 0.57881
Target:  5'- cCAGCcgGGaCGGGUGAGUUCgCUAGgCAAGCa -3'
miRNA:   3'- -GUUG--CC-GCCCGCUCAAG-GGUC-GUUUG- -5'
5116 5' -55.6 NC_001798.1 + 101835 0.72 0.599298
Target:  5'- -cGCGGCgGGGgGAGgcgugggUCCCGGCGgcGGCg -3'
miRNA:   3'- guUGCCG-CCCgCUCa------AGGGUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 53541 0.72 0.599298
Target:  5'- --cCGGCGGGCGAcugcGacCCCAGCcuGCa -3'
miRNA:   3'- guuGCCGCCCGCU----CaaGGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 73648 0.72 0.609582
Target:  5'- gAugGGCGGGgGGGUUCgggCGGCGGAa -3'
miRNA:   3'- gUugCCGCCCgCUCAAGg--GUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 154415 0.72 0.617823
Target:  5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3'
miRNA:   3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 77 0.72 0.617823
Target:  5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3'
miRNA:   3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.