miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 77 0.72 0.617823
Target:  5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3'
miRNA:   3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 237 0.66 0.91281
Target:  5'- -cGCGGCaGGaCGGGga-CUAGCAGGCu -3'
miRNA:   3'- guUGCCGcCC-GCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 1409 0.66 0.924253
Target:  5'- gCAGCGGCGcGCccAGgcCCCAGCGcGCg -3'
miRNA:   3'- -GUUGCCGCcCGc-UCaaGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 1776 0.67 0.865334
Target:  5'- -cACGGCGGGC-AGcaCCUcGCAGGCc -3'
miRNA:   3'- guUGCCGCCCGcUCaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 1834 0.67 0.865334
Target:  5'- --uCGGCGGGCcAG-UCCgCGGCGcGCa -3'
miRNA:   3'- guuGCCGCCCGcUCaAGG-GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 2248 0.69 0.789414
Target:  5'- aGGCGGCGGGCGcGccgCCGGgGGGCg -3'
miRNA:   3'- gUUGCCGCCCGCuCaagGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 2282 0.66 0.900405
Target:  5'- gCAGCGcGCGGccaGCGAGg--CCAGCGcGCg -3'
miRNA:   3'- -GUUGC-CGCC---CGCUCaagGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 2404 0.7 0.741822
Target:  5'- gGGCGGCGGcCGAGggCgCCGGCGuguGGCu -3'
miRNA:   3'- gUUGCCGCCcGCUCaaG-GGUCGU---UUG- -5'
5116 5' -55.6 NC_001798.1 + 2539 0.66 0.924253
Target:  5'- gGGCGGgGGGCGcGgcCCCcGCGGGa -3'
miRNA:   3'- gUUGCCgCCCGCuCaaGGGuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 2690 0.67 0.857659
Target:  5'- -cGCGGCGaGCGAGUcggCCgCGGCGAc- -3'
miRNA:   3'- guUGCCGCcCGCUCAa--GG-GUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 2766 0.73 0.548385
Target:  5'- gCGGCGGCGgcGGCGGcGgagCUCAGCAGGCg -3'
miRNA:   3'- -GUUGCCGC--CCGCU-Caa-GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 3019 0.71 0.661104
Target:  5'- -cGCGGCGGGCcGGgcUCCGGCcAGCc -3'
miRNA:   3'- guUGCCGCCCGcUCaaGGGUCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 3323 0.77 0.364763
Target:  5'- gCGGCGGCGgcGGCGGGcUUCCC-GCGGGCg -3'
miRNA:   3'- -GUUGCCGC--CCGCUC-AAGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 5922 0.71 0.650813
Target:  5'- gGACGGgGGGCGGgccGUUCCUcGCGcACa -3'
miRNA:   3'- gUUGCCgCCCGCU---CAAGGGuCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 6018 0.68 0.841695
Target:  5'- gCAGCGGCGGcaucGCGAaggGggCCaCAGCGAGa -3'
miRNA:   3'- -GUUGCCGCC----CGCU---CaaGG-GUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 9696 0.67 0.857659
Target:  5'- -cACGuGCGGGCGGGUgggCUCGaCGGGCu -3'
miRNA:   3'- guUGC-CGCCCGCUCAa--GGGUcGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 15378 0.67 0.872795
Target:  5'- cCGugGGCGcGGCgGAGgcgCCCAcCGGACc -3'
miRNA:   3'- -GUugCCGC-CCG-CUCaa-GGGUcGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 16073 0.73 0.562529
Target:  5'- gGGCGGCGGGCGucuGUgggggcagacagcgcUCCCGG-AAACg -3'
miRNA:   3'- gUUGCCGCCCGCu--CA---------------AGGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 16489 0.66 0.900405
Target:  5'- uGACGGCaGGcGCGGGUgagCCGGUAGuACg -3'
miRNA:   3'- gUUGCCG-CC-CGCUCAag-GGUCGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 18225 0.69 0.789414
Target:  5'- gGACGGUGGGCGggaaggguggauGGUUUCCGGgGGc- -3'
miRNA:   3'- gUUGCCGCCCGC------------UCAAGGGUCgUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.