miRNA display CGI


Results 1 - 20 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 154415 0.72 0.617823
Target:  5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3'
miRNA:   3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 154199 0.67 0.872795
Target:  5'- ---gGGCGGGaGAGUUCaCuCGGCAcGCa -3'
miRNA:   3'- guugCCGCCCgCUCAAG-G-GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 154151 0.68 0.841695
Target:  5'- -cAUGGCGGGCGGcuGggCUCGGCGuaGGCc -3'
miRNA:   3'- guUGCCGCCCGCU--CaaGGGUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 154124 0.68 0.816318
Target:  5'- cCGGCGGCGGG-GAc--CCCGGCGgcggGACa -3'
miRNA:   3'- -GUUGCCGCCCgCUcaaGGGUCGU----UUG- -5'
5116 5' -55.6 NC_001798.1 + 153802 0.66 0.893847
Target:  5'- gCGGCGGCGGGgGgcAGgcggCGGCAGGCg -3'
miRNA:   3'- -GUUGCCGCCCgC--UCaaggGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 153083 0.67 0.865334
Target:  5'- gAGCGGCgGGGCGGcgccGggCCCucGCGGAUa -3'
miRNA:   3'- gUUGCCG-CCCGCU----CaaGGGu-CGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 150928 0.68 0.807508
Target:  5'- gGGgGGCGGGCGGGacguagUCCaCuGCAGAg -3'
miRNA:   3'- gUUgCCGCCCGCUCa-----AGG-GuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 150424 0.66 0.906727
Target:  5'- gCGGCGGCGGcGCGGGgcggacUCCGGaCGcGCg -3'
miRNA:   3'- -GUUGCCGCC-CGCUCaa----GGGUC-GUuUG- -5'
5116 5' -55.6 NC_001798.1 + 150372 0.73 0.52838
Target:  5'- -cACGGCGGGCGGcgcGggCCCGGCc-GCg -3'
miRNA:   3'- guUGCCGCCCGCU---CaaGGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 149975 0.7 0.741822
Target:  5'- cCGACGG-GGGCGcGGcgCCC-GCGGACg -3'
miRNA:   3'- -GUUGCCgCCCGC-UCaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 149181 0.68 0.833419
Target:  5'- cCggUGGgGGGCGGcUUCCuucgggCAGCAAGCc -3'
miRNA:   3'- -GuuGCCgCCCGCUcAAGG------GUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 142855 0.69 0.789414
Target:  5'- gGACGGCGGGgGugcuuagucuGGUUCCguagaCAGCAuGACg -3'
miRNA:   3'- gUUGCCGCCCgC----------UCAAGG-----GUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 142563 1.1 0.002534
Target:  5'- cCAACGGCGGGCGAGUUCCCAGCAAACa -3'
miRNA:   3'- -GUUGCCGCCCGCUCAAGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 141490 0.66 0.900405
Target:  5'- -cGCGGgGGGCuGAuGUccguggCCCuGCAGACg -3'
miRNA:   3'- guUGCCgCCCG-CU-CAa-----GGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 137306 0.69 0.789414
Target:  5'- gGAUGGC-GGCGGccGUUCCCucaucGGCGGGCg -3'
miRNA:   3'- gUUGCCGcCCGCU--CAAGGG-----UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 136668 0.69 0.798537
Target:  5'- gGACGGgGGGCGGauuGUUggCCAGCAggUa -3'
miRNA:   3'- gUUGCCgCCCGCU---CAAg-GGUCGUuuG- -5'
5116 5' -55.6 NC_001798.1 + 132604 0.66 0.904855
Target:  5'- gAGCGccaGCGGGC-AGUggccggcacaguuuUCCCAGguGACg -3'
miRNA:   3'- gUUGC---CGCCCGcUCA--------------AGGGUCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 132155 0.71 0.681606
Target:  5'- --cCGGCGGGCGGGgcgCCCccccCGGACg -3'
miRNA:   3'- guuGCCGCCCGCUCaa-GGGuc--GUUUG- -5'
5116 5' -55.6 NC_001798.1 + 129576 0.67 0.887057
Target:  5'- cCGACGGCGGG-GAGgucgUCUC-GCuGACc -3'
miRNA:   3'- -GUUGCCGCCCgCUCa---AGGGuCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 128875 0.69 0.798537
Target:  5'- uGAUGGCGcGGCGAucgccggaggcGUUCCgGGCGuuCa -3'
miRNA:   3'- gUUGCCGC-CCGCU-----------CAAGGgUCGUuuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.