miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 127934 0.69 0.798537
Target:  5'- cCGACGGCGGGgcccCGGGcgaaaaggCCCGGCccGCg -3'
miRNA:   3'- -GUUGCCGCCC----GCUCaa------GGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 127229 0.67 0.865334
Target:  5'- aCAACGaGCGGGcCGAGUUuaacaaccgccCCCugaAGCAcGACg -3'
miRNA:   3'- -GUUGC-CGCCC-GCUCAA-----------GGG---UCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 125415 0.66 0.91281
Target:  5'- gCGACGGCcgagaagaGcGGCGAGUgcUCgCAGCAGu- -3'
miRNA:   3'- -GUUGCCG--------C-CCGCUCA--AGgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 122090 0.69 0.798537
Target:  5'- --cUGGCGGGCcugGAGccgCCCGGCGGGg -3'
miRNA:   3'- guuGCCGCCCG---CUCaa-GGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 120384 0.66 0.918079
Target:  5'- aCGACGcaGCGGGCGAuGUccgcgggggccgaUCCC-GUGAGCg -3'
miRNA:   3'- -GUUGC--CGCCCGCU-CA-------------AGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 109671 0.71 0.650813
Target:  5'- -cACGGCcguccuccGGGCGccGUUCCUGGCGGGCg -3'
miRNA:   3'- guUGCCG--------CCCGCu-CAAGGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 105612 0.69 0.780146
Target:  5'- gGGCGGCGGGCGGGcgacgaCGGCGc-- -3'
miRNA:   3'- gUUGCCGCCCGCUCaagg--GUCGUuug -5'
5116 5' -55.6 NC_001798.1 + 105189 0.67 0.880038
Target:  5'- -cGCGGC-GGCGGGgcCCgCGGUggGCg -3'
miRNA:   3'- guUGCCGcCCGCUCaaGG-GUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 102563 0.69 0.794906
Target:  5'- uCAGCGGCGGGUGGcGgggcgcggauugCCCGGUgacGAGCu -3'
miRNA:   3'- -GUUGCCGCCCGCU-Caa----------GGGUCG---UUUG- -5'
5116 5' -55.6 NC_001798.1 + 102232 0.68 0.833419
Target:  5'- -cGCGGCucgGGGCGGGccucgCCCGGguAAUa -3'
miRNA:   3'- guUGCCG---CCCGCUCaa---GGGUCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 101835 0.72 0.599298
Target:  5'- -cGCGGCgGGGgGAGgcgugggUCCCGGCGgcGGCg -3'
miRNA:   3'- guUGCCG-CCCgCUCa------AGGGUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 98630 0.66 0.918653
Target:  5'- gGGCGGCGuGGCcgcGAccgUCgCGGCGAACg -3'
miRNA:   3'- gUUGCCGC-CCG---CUca-AGgGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 97842 0.66 0.924253
Target:  5'- uGACGGCGGGCGcGggCaCGGuCAucGACa -3'
miRNA:   3'- gUUGCCGCCCGCuCaaGgGUC-GU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 96983 0.67 0.865334
Target:  5'- -cGCGGCGGGCGgcGGggCCagGGCcGGCc -3'
miRNA:   3'- guUGCCGCCCGC--UCaaGGg-UCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 95688 0.66 0.900405
Target:  5'- gCGGCGGCggGGGCGGccggcGUcgCCCgaaAGCGGGCg -3'
miRNA:   3'- -GUUGCCG--CCCGCU-----CAa-GGG---UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 95375 0.67 0.857659
Target:  5'- -uGCGGaGGGCGGGgcggcggUCgCCAGCAGc- -3'
miRNA:   3'- guUGCCgCCCGCUCa------AG-GGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 93525 0.69 0.761217
Target:  5'- --uCGGCGGaacccagGAGUUCgCCGGCGAGCa -3'
miRNA:   3'- guuGCCGCCcg-----CUCAAG-GGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 93156 0.66 0.91281
Target:  5'- uGAUGGCGGGCGAcgccgCCCuGGCc--- -3'
miRNA:   3'- gUUGCCGCCCGCUcaa--GGG-UCGuuug -5'
5116 5' -55.6 NC_001798.1 + 93122 0.71 0.691799
Target:  5'- --cCGGCGGGCGGGUUUgagCAGCGc-- -3'
miRNA:   3'- guuGCCGCCCGCUCAAGg--GUCGUuug -5'
5116 5' -55.6 NC_001798.1 + 92045 0.67 0.885671
Target:  5'- uCGGCGaaCGGGCGGGUguagaccccaccCCCAGCGccGGCa -3'
miRNA:   3'- -GUUGCc-GCCCGCUCAa-----------GGGUCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.