miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 132604 0.66 0.904855
Target:  5'- gAGCGccaGCGGGC-AGUggccggcacaguuuUCCCAGguGACg -3'
miRNA:   3'- gUUGC---CGCCCGcUCA--------------AGGGUCguUUG- -5'
5116 5' -55.6 NC_001798.1 + 2282 0.66 0.900405
Target:  5'- gCAGCGcGCGGccaGCGAGg--CCAGCGcGCg -3'
miRNA:   3'- -GUUGC-CGCC---CGCUCaagGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 141490 0.66 0.900405
Target:  5'- -cGCGGgGGGCuGAuGUccguggCCCuGCAGACg -3'
miRNA:   3'- guUGCCgCCCG-CU-CAa-----GGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 95688 0.66 0.900405
Target:  5'- gCGGCGGCggGGGCGGccggcGUcgCCCgaaAGCGGGCg -3'
miRNA:   3'- -GUUGCCG--CCCGCU-----CAa-GGG---UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 16489 0.66 0.900405
Target:  5'- uGACGGCaGGcGCGGGUgagCCGGUAGuACg -3'
miRNA:   3'- gUUGCCG-CC-CGCUCAag-GGUCGUU-UG- -5'
5116 5' -55.6 NC_001798.1 + 56565 0.66 0.89781
Target:  5'- gCGACGGCcaccuucuccgccGGCGAGgagucgUCCCccaggaaccaGGCAAACg -3'
miRNA:   3'- -GUUGCCGc------------CCGCUCa-----AGGG----------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 76651 0.66 0.893847
Target:  5'- -uGCGGCaGGCGAGggCCauggaGGCGGc- -3'
miRNA:   3'- guUGCCGcCCGCUCaaGGg----UCGUUug -5'
5116 5' -55.6 NC_001798.1 + 30146 0.66 0.893847
Target:  5'- aAGCaGCGGGCGGGgggCCgGGguGAg -3'
miRNA:   3'- gUUGcCGCCCGCUCaa-GGgUCguUUg -5'
5116 5' -55.6 NC_001798.1 + 42489 0.66 0.893847
Target:  5'- aCAACGuacgGGGCGGGga-CCGGUAGGCa -3'
miRNA:   3'- -GUUGCcg--CCCGCUCaagGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 153802 0.66 0.893847
Target:  5'- gCGGCGGCGGGgGgcAGgcggCGGCAGGCg -3'
miRNA:   3'- -GUUGCCGCCCgC--UCaaggGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 24168 0.67 0.887057
Target:  5'- uGGCGGCGGGCcgcuucggcuGGggCCUGGCGcACg -3'
miRNA:   3'- gUUGCCGCCCGc---------UCaaGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 129576 0.67 0.887057
Target:  5'- cCGACGGCGGG-GAGgucgUCUC-GCuGACc -3'
miRNA:   3'- -GUUGCCGCCCgCUCa---AGGGuCGuUUG- -5'
5116 5' -55.6 NC_001798.1 + 92045 0.67 0.885671
Target:  5'- uCGGCGaaCGGGCGGGUguagaccccaccCCCAGCGccGGCa -3'
miRNA:   3'- -GUUGCc-GCCCGCUCAa-----------GGGUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 23503 0.67 0.884975
Target:  5'- cCAGCGccgcagaccacgccGCGGGCGGGacCCuCGGCGcgGACg -3'
miRNA:   3'- -GUUGC--------------CGCCCGCUCaaGG-GUCGU--UUG- -5'
5116 5' -55.6 NC_001798.1 + 77565 0.67 0.880038
Target:  5'- gGACGGCcGGgGAccauuccCCCAGCGGGCg -3'
miRNA:   3'- gUUGCCGcCCgCUcaa----GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 36425 0.67 0.880038
Target:  5'- gGGCGGUgGGGCGGGgucggggUCgCGGCGGGg -3'
miRNA:   3'- gUUGCCG-CCCGCUCa------AGgGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 77226 0.67 0.880038
Target:  5'- --cCGuGCGGGCGcauGGcgCCCuGGCGGACg -3'
miRNA:   3'- guuGC-CGCCCGC---UCaaGGG-UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 105189 0.67 0.880038
Target:  5'- -cGCGGC-GGCGGGgcCCgCGGUggGCg -3'
miRNA:   3'- guUGCCGcCCGCUCaaGG-GUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 154199 0.67 0.872795
Target:  5'- ---gGGCGGGaGAGUUCaCuCGGCAcGCa -3'
miRNA:   3'- guugCCGCCCgCUCAAG-G-GUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 22375 0.67 0.872795
Target:  5'- -uGCGGUuccaccuggGGGCGGaacCCCGGCGAGCc -3'
miRNA:   3'- guUGCCG---------CCCGCUcaaGGGUCGUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.